New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 688284	50 (0.950)	4 (0.080)	4/236	NT	7.8%	coding (1146/1182 nt)	ydgK	Bcr/CflA family multidrug resistance transporter
	?	NC_002947	= 688348	46 (0.910)					coding (24/183 nt)	PP_5446	hypothetical protein

GCGTGCCGGCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/688131‑688284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGAC  <  NC_002947/688348‑688201                                                                                                                                                                                                                                                                                                                GCGTGCCGGCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGC                                                                                                                                                          <  2:152636/150‑1                                              CGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGAGGTGCGGTGCCCATGGCAATCGTGATCGGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCC                                                                                                             >  1:26773/1‑150                                                                GGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGG                                                                                           <  2:1377253/150‑1                                                                  CGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGTTGACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGT                                                                                         <  1:932964/150‑1                                                                              TACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAAC                                                                             <  2:26773/150‑1                                                                                                                                                         TGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGAC  <  1:186812/150‑1                                                                                                                                                         TGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGC                                                                                  <  1:214883/70‑1                                                                                                                                                         TGGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGC                                                                                  >  2:214883/1‑70                                                                                                                                                                                                                                                                                                                GCGTGCCGGCAGCGCCTCGGCACTGATGGGCTGCGTGCAGTTCAGCGTAGCTGCGGGTGCTGCGGCGCTGGTCGGGCTACTGCATGATGGCAGTGCGGTGCCCATGGCAATCGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/688131‑688284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgGAAACCCGGCTGCAGGCACCTCACCCGCTTATGCGGGAGCCTTGGCCTGCAAACGCCGGGTCAACAGCGCAACACTGACCACCAGCGCCCCGCACAGGCTGATCACGATTGCCATGGGCACCGCACTGCCATCATGCAGTAGCCCGAC  <  NC_002947/688348‑688201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.