New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1168587	62 (1.180)	3 (0.070)	3/210	NT	5.6%	intergenic (+98/+155)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase
	?	NC_002947	= 1168660	49 (1.090)					intergenic (+171/+82)	eda/leuA	KHG/KDPG aldolase/2‑isopropylmalate synthase

GAACGGTGACTGGGCGCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1168423‑1168587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccctttcgcgggtaAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAGCGCCCCACAA  <  NC_002947/1168660‑1168512                                                                                                                                                                                                                                                                                                                            GAACGGTGACTGGGCGCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTG                                                                                                                                                                      >  2:690654/1‑150  AACGGTGACTGGGCGCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGG                                                                                                                                                                     <  1:989441/150‑1           TGGGCGCGGATCGAAGCGTGCAGTGACGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGC                                                                                                                                                            >  1:1261575/1‑150             GGCGCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGG                                                                                                                                                          <  2:475551/150‑1                GCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTA                                                                                                                                                       >  1:1149778/1‑150                                                             CAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCG                                                                                                                                                           >  1:489919/1‑101                                                             CAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCG                                                                                                                                                           <  2:489919/101‑1                                                               ACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGG                                                                                                                                                          <  1:1255379/100‑1                                                               ACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGG                                                                                                                                                          >  2:1255379/1‑100                                                                   AAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTAAACCCGCTCCTACTACAGCCTGTGTCCAAAACCCGGCGTGTGCCCACCGCc                                                                                                    >  2:563340/1‑149                                                                                    TACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGCGTGTGCCCACCGCAGATCGGTGCGTAGGAGC                                                                                   <  1:563340/150‑1                                                                                         CTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTC                                                                              <  1:1349399/150‑1                                                                                                      TGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTG                                                                                                                                                                      <  2:935329/49‑1                                                                                                      TGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTG                                                                                                                                                                      >  1:935329/1‑49                                                                                                                                                       GCCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCATCACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGAC                >  2:875790/1‑150                                                                                                                                                       GCCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGAC                >  2:1074660/1‑150                                                                                                                                                       GCCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGGCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAAGGGCGCCGAC                >  2:1011232/1‑150                                                                                                                                                        CCCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACC               >  1:1265114/1‑150                                                                                                                                                         CCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCA              >  2:153941/1‑150                                                                                                                                                         CCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCA              >  1:1042438/1‑150                                                                                                                                                         CCTTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTCAGCAACGCAGATCGGTGGCAATGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCA              >  1:1243209/1‑150                                                                                                                                                           TTTCGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAG            >  2:1109833/1‑150                                                                                                                                                           TTTCGCGGGTAAACCCGCTACTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGAGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGAAAAAAAAAGGGGCGCCGACCAAG            <  2:576363/150‑1                                                                                                                                                              CGCGGGTAAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAGCGC         <  1:830390/150‑1                                                                                                                                                                     AAACCCGCTCCTACTACCGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGAGAGTCTATCCGCGAAAGGGCCAGCAAAACAACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAGCGCCCCACAA  <  2:2663/150‑1                                                                                                                                                                     AAACCCGCCCCTACTTCGGCCTGTGTCCAACACCCGGTGTGTCCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTCCCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAGCGCCCCACAA  <  1:834654/150‑1                                                                                                                                                                                                                                                                                                                            GAACGGTGACTGGGCGCGGATCGAAGCGTGCAGTGCCGAGGCGATGGCACTGCTGGACGCCAACTGAAAACAGTTGTGTGCTTTACGGCTTGTGGGGCGCTTGGTCGGCGCCCCTTTTTTTTGCCTGGGGTATTTGCAGTGGTTGTGCTGGCCCTTTCGCGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1168423‑1168587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccctttcgcgggtaAACCCGCTCCTACTACGGCCTGTGTCCAACACCCGGTGTGTGCCCACCGCAGATCGGTGCGTAGGAGCGGGTCTACCCGCGAAAGGGCCAGCACAACCACTGCAAATACCCCAGGCAAAAAAAAGGGGCGCCGACCAAGCGCCCCACAA  <  NC_002947/1168660‑1168512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.