| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1340973 = | 54 (1.030) | 8 (0.160) | 8/238 | NT | 13.4% | coding (302/870 nt) | PP_1165 | hypothetical protein |
| ? | NC_002947 | 1340994 = | 51 (1.000) | coding (281/870 nt) | PP_1165 | hypothetical protein | |||||
GCCACGACGCCTCGCCTGCTACCCACTGGCGCCTTGGTCCAACCGCATTGGCGAGGGTGGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATACCGGGCATGACCCTTACCCGATCCATGGCAGTGCCTGGCAGCAGGCCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1341125‑1340973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaCTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGC > NC_002947/1340994‑1341142 GCCACGACGCCTCGCCTGCTACCCACTGGCGCCTTGGTCCAACCGCATTGGCGAGGGTGGCTTTGCGCGACACGAGGGGTGGCAGGCACTGGCACCCAATACCGGGCATGACCGTTACCCGATCCATGGCAGTGCCTGGCAGCAGGCCTG > 1:839051/1‑150 CCACGACGCCTCGCCTGCTACCCACTGGCGCCTTGGTCCAACCGCATTGGCGAGGGTGGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATACCGGGCATGACCCTTACCCGATCCATGGCAGTGCCTGGCAGCAGGCCTGG < 2:746786/150‑1 TGGCAGTGCCTGGCAGCAGGCCTGGCACTGCCATGGCTCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTC < 1:100946/107‑1 TGGCAGTGCCTGGCAGCAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTC > 2:100946/1‑107 GTGCCTGGCAGCAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGC > 1:166847/1‑104 GTGCCTGGCAGCAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGC < 2:166847/104‑1 TGCCTGGCAGCAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCA > 1:208124/1‑74 TGCCTGGCAGCAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCA < 2:208124/74‑1 CAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGG > 1:209706/1‑101 CAGGCCTGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGG < 2:209706/101‑1 ACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGC > 1:171807/1‑150 ACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCA > 1:56350/1‑107 ACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCA < 2:56350/107‑1 GCCACGACGCCTCGCCTGCTACCCACTGGCGCCTTGGTCCAACCGCATTGGCGAGGGTGGCTTTGCCCGACCCGAGGGGTGGCAGGCACTGGCACCCAATACCGGGCATGACCCTTACCCGATCCATGGCAGTGCCTGGCAGCAGGCCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1341125‑1340973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaCTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGC > NC_002947/1340994‑1341142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |