| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1635736 | 50 (0.950) | 5 (0.110) | 5/212 | NT | 8.8% | intergenic (+40/‑130) | era/recO | GTPase Era/DNA repair protein RecO |
| ? | NC_002947 | = 1635806 | 60 (1.330) | intergenic (+110/‑60) | era/recO | GTPase Era/DNA repair protein RecO | |||||
GAGGCGCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1635571‑1635736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgtgtcgcgaAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCAG < NC_002947/1635806‑1635667 GAGGCGCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGG > 1:64774/1‑150 AGGCGCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGC < 1:5160/150‑1 GCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCC > 1:1307347/1‑150 CATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGC < 2:1307347/150‑1 ATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTGGGAGCGGCCTTGTGTCGCG > 1:721020/1‑150 AACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGC > 2:639118/1‑150 TCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCAT > 1:830948/1‑150 CGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGA < 2:830948/150‑1 TGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAA < 1:639118/150‑1 CGACCTGTAAGCCGCGCGCTGGTCCCTGTGGGAGCGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACC < 2:721020/150‑1 CGGCCTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGA < 1:107961/150‑1 CTTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGC < 2:1097707/150‑1 TTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGC < 1:984418/143‑1 TTGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGC > 2:984418/1‑143 TTGTGCCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCA < 2:812658/150‑1 TGTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCAG < 2:23219/150‑1 GTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGG > 1:967308/1‑92 GTGTCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGG < 2:967308/92‑1 TCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGC > 1:916998/1‑133 TCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGC < 2:916998/133‑1 TCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGAC < 2:1404810/105‑1 TCGCGAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGAC > 1:1404810/1‑105 GAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGAC > 1:661112/1‑101 GAAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGAC < 2:661112/101‑1 AAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGC < 2:370483/67‑1 AAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGC > 1:370483/1‑67 GAGGCGCGCAAGGACATGGAAGTGCTGTTCGATTCCAAGGTCATGCTCAACCTGTGGGTCAAGGTAAAGGGCGGCTGGTCCGACGACGAGCGCGCCCTGCGTTCGCTGGGCTACGGCGACCTGTAAGCCGCGCGCTGGTCCCTGTAGGGGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1635571‑1635736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttgtgtcgcgaAAAGGGCCGCAAAGCGGCCCCAGATTTTTAGCTTCGCAGCATAAATCGCCGGGGCTGCTGCGTAGCCCTATCGCGACACAAGGCCGCCCCTACAGGGACCAGCGCGCGGCTTACAGGTCGCCGTAGCCCAGCGAACGCAG < NC_002947/1635806‑1635667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |