| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1666584 = | 61 (1.160) | 4 (0.080) | 4/236 | NT | 6.0% | coding (187/852 nt) | PP_1460 | membrane protein |
| ? | NC_002947 | 1666643 = | 66 (1.310) | coding (128/852 nt) | PP_1460 | membrane protein | |||||
CCAGGGCCGCAAGGCCGAAAAGCGCCTGCTTGGCCTGCTGGGTGCCATCGCGGTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1666642‑1666584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAG > NC_002947/1666643‑1666791 CCAGGGCCGCAAGGCCGAAAAGCGCCTGCTTGGCCTGCTGGGTGCCATCGCGGTCCTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTC > 1:662524/1‑150 CAGGGCCGCAAGGCCGAAAAGCGCCTGCTTGGCCTGCTGGGTGCCATCGCGGTCCTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAG < 1:1168609/136‑1 CAGGGCCGCAAGGCCGAAAAGCGCCTGCTTGGCCTGCTGGGTGCCATCGCGGTCCTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAG > 2:1168609/1‑136 cCCTGCTGGGGGCCATCGCCGTCCTTGTGCCGGTATGTGCCCTGTTAGATTGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTT < 2:662524/149‑1 CCTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTT > 1:1069934/1‑102 CCTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTT < 2:1069934/102‑1 CTGGGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGG > 1:546095/1‑150 GGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGTAAG > 1:408672/1‑150 GGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAG < 1:1262517/79‑1 GGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAG > 2:1262517/1‑79 CCAGGGCCGCAAGGCCGAAAAGCGCCTGCTTGGCCTGCTGGGTGCCATCGCGGTCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1666642‑1666584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggGACAGGTATGAGCCCTGGTAGATGGCCGCCGCTATATATAGGCCGGCTGCGATCAGGTTGGGGATGAGGCTGGGTGAGGAGAACATAAGTCCTGGTTGGCGAGCCTTTAAAGAGACGGAGTTTGGCATAGATTCCGCTGATCAAGGAAG > NC_002947/1666643‑1666791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |