New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 172207749 (0.930)3 (0.060) 3/238 NT 6.0% coding (668/3066 nt) PP_1517 RND family transporter
?NC_002947 = 1722118 47 (0.920)coding (709/3066 nt) PP_1517 RND family transporter

GATGTGGGCAAGGTCGATCTGATCGGCCTGCAGGACGAGAAAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1721926‑1722077
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCTCGAAGAAACCGGCGGTGCTCACCGCGTTCTGCTCTTGCAACGCCTTCTGCACGGCTTCCAGCGGCACGCCGAGGGTGGCCAGCTTGAGGTTGGACAGCTCGATCCA  <  NC_002947/1722118‑1721971
                                                                                                                                                                                                                                                                                                            
GATGTGGGCAAGGTCGATCTGATCGGCCTGCAGGACGAGAAAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTC                                                                                                                                                        <  2:619826/150‑1
 ATGTGGGCAAGGTCGATCTGATCGGCCTGCAGGACGAGAAAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCG                                                                                                                                                       <  2:706676/150‑1
  TGTGGGCAAGGTCGATCTGATCGGCCTGCAGGACGAGAAAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGA                                                                                                                                                      >  2:1167322/1‑150
                                        AAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGC                                                                                                                <  1:1292769/150‑1
                                               GATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCT                                                                                                            <  1:540570/147‑1
                                               GATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCT                                                                                                            >  2:540570/1‑147
                                                                                                                                                    TCGAAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCTCGAAGAAACCGGCGGTGCTCACCGCGTTCTGCTCTTGCAACGCCTTCTGCACGGCTTCCAGCGGCACGCCGAGGGTGGCCAGCTTGAGGTTGGACAGCTCGATC    >  2:1025124/1‑150
                                                                                                                                                      GAAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCTCGAAGAAACCGGCGGTGCTCACCGCGTTCTGCTCTTGCAACGCCTTCTGCACGGCTTCCAGCGGCACGCCGAGGGTGGCCAGCTTGAGGTTGGACAGCTCGATCCA  >  2:320747/1‑150
                                                                                                                                                                                                                                                                                                            
GATGTGGGCAAGGTCGATCTGATCGGCCTGCAGGACGAGAAAGTCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1721926‑1722077
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgaAACGCCCGCTCACGCGCAGTTGCAAGCGCTCGCTGGGCGTCTCGAAGAAACCGGCGGTGCTCACCGCGTTCTGCTCTTGCAACGCCTTCTGCACGGCTTCCAGCGGCACGCCGAGGGTGGCCAGCTTGAGGTTGGACAGCTCGATCCA  <  NC_002947/1722118‑1721971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.