New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1722077 | 49 (0.930) | 3 (0.060) | 3/238 | NT | 6.0% | coding (668/3066 nt) | PP_1517 | RND family transporter |
? | NC_002947 | = 1722118 | 47 (0.920) | coding (709/3066 nt) | PP_1517 | RND family transporter |
TCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTGGCCTGGC > NC_002947/1721969‑1722266 | tCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGCGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGtt > 1:726162/1‑150 (MQ=255) tGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtc > 2:320747‑M2/1‑148 (MQ=255) gATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcga > 2:1025124‑M2/1‑146 (MQ=255) gAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAgt > 2:1164369/1‑150 (MQ=255) gAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAgt < 2:1210406/150‑1 (MQ=255) cAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCa > 1:1175374/1‑150 (MQ=255) cAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCa > 1:1180061/1‑150 (MQ=255) cAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCa > 1:719444/1‑150 (MQ=255) cAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACACTGTCGaaac < 1:1167322/150‑4 (MQ=255) cAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTACTCGGGCGTTTCGACAGTGTCGAGCa > 1:360846/1‑150 (MQ=255) cTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATc > 1:624397/1‑150 (MQ=255) cTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAg < 1:1228421/150‑1 (MQ=255) gCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTc > 1:728811/1‑150 (MQ=255) tCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTc > 2:737442/1‑150 (MQ=255) gCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGTTCGCCGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTggg < 1:373925/150‑1 (MQ=255) ccGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGt > 1:858236/1‑150 (MQ=255) cGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTg > 2:1329573/1‑150 (MQ=255) tGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATc > 2:1202570/1‑150 (MQ=255) aGCCGTGCAGCAGACCTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGCGGAGCCTGGCGGTCGCTTGCACCTCCTCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCAc < 1:461666/150‑1 (MQ=255) aGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCAc < 2:858236/150‑1 (MQ=255) gTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGACGGTTTCTTCGAGACGCCCAGCGAGCGCTGGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTc > 1:1098481/1‑150 (MQ=255) aGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGa < 2:728811/150‑1 (MQ=255) gAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGAt < 1:737442/150‑1 (MQ=255) aaGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGAtt < 1:1202570/150‑1 (MQ=255) aGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTg < 1:1164369/150‑1 (MQ=255) gCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGt < 1:1193617/150‑1 (MQ=255) ttggcagagCAGAACGCTGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGAt < 1:733756/145‑1 (MQ=255) aaGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCg > 2:1247983/1‑150 (MQ=255) gagCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTGGCAACTGCGCGTGAACGGGCGTTTCGACAGTGCCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGcc > 1:811405/1‑150 (MQ=255) gAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGt > 1:641502/1‑150 (MQ=255) aCGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGt < 2:51354/134‑1 (MQ=255) aCGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGt > 1:51354/1‑134 (MQ=255) gTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTg < 1:1110805/127‑1 (MQ=255) gTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTg > 2:1110805/1‑127 (MQ=255) tGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTg < 2:1175374/150‑1 (MQ=255) cgccgGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCaa < 2:1180061/150‑1 (MQ=255) ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTcc < 1:1319533/76‑1 (MQ=255) ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTcc > 2:1319533/1‑76 (MQ=255) ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGt < 1:541601/132‑1 (MQ=255) ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGt > 2:541601/1‑132 (MQ=255) ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCt < 1:816147/150‑1 (MQ=255) agaCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagctcgatc < 1:540570‑M2/147‑106 (MQ=255) agaCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagctcgatc > 2:540570‑M2/1‑42 (MQ=255) agaCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCAc > 2:879511/1‑150 (MQ=255) gaCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCAcc < 2:719444/150‑1 (MQ=255) gCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagctcgatccagactt < 1:1292769‑M2/150‑113 (MQ=255) gCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACcgcg > 2:928521/1‑150 (MQ=255) cAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCAt > 1:268329/1‑150 (MQ=255) ttGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGt > 1:1012477/1‑111 (MQ=255) ttGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTCCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATg > 1:177918/1‑150 (MQ=255) ttGCAACTGCGCGTGAGCGGGCGTTGCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGt < 2:1012477/111‑1 (MQ=255) aaCTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCg > 2:1115092/1‑150 (MQ=255) aCTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGa < 2:360846/150‑1 (MQ=255) cccgTTAGCGGCCGGTTCGACAGTATCGAACAGATCCGCCAGTTCCCCATTCGCCTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGTACCGTTGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGAt < 2:567467/148‑1 (MQ=255) gcgTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATg > 2:1032099/1‑150 (MQ=255) gTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGa < 2:804550/100‑1 (MQ=255) gTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGa > 1:804550/1‑100 (MQ=255) gTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTCCATGGGCGAGGATGCCATTGGCCTgg < 1:55640/150‑1 (MQ=255) tttCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCt < 2:1259398/122‑1 (MQ=255) tttCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCt > 1:1259398/1‑122 (MQ=255) tttCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTGGCCTGGc > 2:1070434/1‑150 (MQ=255) | TCTGGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGTGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTGGCCTGGC > NC_002947/1721969‑1722266 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |