New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1862545	53 (1.010)	5 (0.100)	4/238	NT	9.0%	coding (189/1068 nt)	PP_1666	hypothetical protein
	?	NC_002947	= 1862562	50 (0.980)					coding (206/1068 nt)	PP_1666	hypothetical protein

AAATGTCTCCGGCCTTTATCAGGTGCGCGAGCCGGTCACCGGGCCGGGCGCCGAAGCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1862422‑1862545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCGGCTCGCGCACCTGATAAAGGCCGGAGACATTTTCAGCC  <  NC_002947/1862562‑1862416                                                                                                                                                                                                                                                                                 AAATGTCTCCGGCCTTTATCAGGTGCGCGAGCCGGTCACCGGGCCGGGCGCCGAAGCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCAATGCAGGGCTCTGCACGGCCTTAGG                                                                                                                           <  1:212724/150‑1                                   GTCACCGGGCCGGGCGCCGAAGCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCAATGCAGGGCTCTGCACGGCCTTAGG                                                                                                                           >  1:1283530/1‑116                                   GTCACCGGGCCGGGCGCCGAAGCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCAATGCAGGGCTCTGCACGGCCTTAGG                                                                                                                           <  2:1283530/116‑1                                                                                           GTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCCAATGCAGGGCTCTGCACGGC                                                                                                                                 <  2:49277/54‑1                                                                                           GTTGGTGCAGCGTATGACCGGTGACCCTAAGGCCAATGCAGGGCTCTGCACGGC                                                                                                                                 >  1:49277/1‑54                                                                                                                          GCCAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCGGCTCGCGCACCTGATAAAGGCCGGAGACATTTTCAGCC  >  2:1151876/1‑150                                                                                                                          GCCAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCG                                        >  1:470690/1‑112                                                                                                                          GCCAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCG                                        <  2:470690/112‑1                                                                                                                            CAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCGGC                                      <  1:519270/112‑1                                                                                                                            CAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCGGC                                      >  2:519270/1‑112                                                                                                                                                                                                                                                                                 AAATGTCTCCGGCCTTTATCAGGTGCGCGAGCCGGTCACCGGGCCGGGCGCCGAAGCCCGTACCGCGGCCACAGTCAAAGCCCTGGATACGTTGGTGCAGCGTCTGACCGGTGACCCTAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1862422‑1862545 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAATGCAGGGCTCTGCACGGCCTTAGGGTCACCGGTCAGACGCTGCACCAACGTATCCAGGGCTTTGACTGTGGCCGCGGTACGGGCTTCGGCGCCCGGCCCGGTGACCGGCTCGCGCACCTGATAAAGGCCGGAGACATTTTCAGCC  <  NC_002947/1862562‑1862416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.