New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2229043 =	51 (0.970)	3 (0.060)	3/228	NT	6.6%	coding (136/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2229110 =	38 (0.780)					coding (203/783 nt)	ycfH	tRNA D‑aminoacylase

AGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGGGTTTCGCCAGGGGCCAGGTCCAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2229200‑2229043 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccgcTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTG  >  NC_002947/2229110‑2229190                                                                                                                                                                                                                                                 AGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCTCGCAACAACCATTCCAACGCCGGGGTTTCGCCAGGGGCCAGGTCCAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACT                                                                                           <  2:1028918/150‑1  GCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGGGTTTCGCCAGAGCCGAGGTCCAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTG                                                                                          >  1:1157829/1‑150       GTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGGGTTTCGCCAGGGGCCAGGTCCAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCC                                                                                     >  1:1187311/1‑150                                                                                          CAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTG  >  1:364493/1‑150                                                                                               GGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCTGGACCTGGCCCCTGG                                                                   <  1:799900/80‑1                                                                                               GGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCTGGACCTGGCCCCTGG                                                                   >  2:799900/1‑80                                                                                                                                                                                                                                                 AGCCCGGTTTCACCAATCGCCACCACATGCGGGTGGGCCAGTTCGCGCAACAACCATTCCAACGCCGGGGTTTCGCCAGGGGCCAGGTCCAGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2229200‑2229043 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccgcTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTG  >  NC_002947/2229110‑2229190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.