New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2229043 =	51 (0.970)	3 (0.060)	3/228	NT	6.6%	coding (136/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2229110 =	38 (0.780)					coding (203/783 nt)	ycfH	tRNA D‑aminoacylase

GGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGTTCCGCCTGCACC  >  NC_002947/2228962‑2229259                                                                                                                                                     |                                                                                                                                                      ggCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTg                                                                                                                                                      <  2:910900/150‑1 (MQ=255) caccaatcgccaccacatgcgggtgggccagttcgcgcaacaaccattccaacgccggggtttcgccaggggccaggtccaGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTg                                                                                                                                                      >  1:364493‑M1/82‑150 (MQ=255)     cccACGACGCTGCCCCGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGAcc                                                                                                                                                  <  2:36240/150‑1 (MQ=255)      ccTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCt                                                                                                                                                 >  1:1313270/1‑150 (MQ=255)       cTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTg                                                                                                                                                >  1:56386/1‑150 (MQ=255)                gCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       >  1:1087624/1‑150 (MQ=255)                gCCCTGCAGGCGGCGAGTGCGGGCTGGGGCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       <  2:684089/150‑1 (MQ=255)                    tGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       <  2:253177/146‑1 (MQ=255)                    tGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       >  1:253177/1‑146 (MQ=255)                     gCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAAc                                                                                                                                  <  2:1199208/150‑1 (MQ=255)                        ggcggcGCGTGAGCGGGGGGTCGGGCATTTCCTGTGCATTGGCGGCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAAcccc                                                                                                                               <  1:1377584/150‑1 (MQ=255)                                   aGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAAt                                                                                                                    <  1:445080/150‑1 (MQ=255)                                    gCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATg                                                                                                                   <  2:318964/150‑1 (MQ=255)                                    gCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATg                                                                                                                   >  2:803420/1‑150 (MQ=255)                                        ggggTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGgttg                                                                                                               >  2:1426178/1‑150 (MQ=255)                                              gggCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTgcgc                                                                                                         >  1:1125564/1‑150 (MQ=255)                                                     tCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTgg                                                                                                  <  1:445041/150‑1 (MQ=255)                                                     tCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTgg                                                                                                  <  2:525941/150‑1 (MQ=255)                                                       cTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGcc                                                                                                >  1:431334/1‑150 (MQ=255)                                                        tgtgCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       >  1:1275989/1‑110 (MQ=255)                                                        tgtgCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGc                                                                                                                                       <  2:1275989/110‑1 (MQ=255)                                                           gCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTTGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCAcc                                                                                            <  1:986985/150‑1 (MQ=255)                                                                      aGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATgtggtg                                                                                 >  2:905428/1‑150 (MQ=255)                                                                       gTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGtggtgg                                                                                <  1:905428/150‑1 (MQ=255)                                                                       gTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCACCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGtggtgg                                                                                <  1:234577/150‑1 (MQ=255)                                                                          ccGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTTGTGGCGa                                                                             <  2:1420223/150‑1 (MQ=255)                                                                           cGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGAt                                                                            <  1:76273/150‑1 (MQ=255)                                                                           cGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGAt                                                                            <  2:188530/150‑1 (MQ=255)                                                                           cGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGAt                                                                            >  1:188530/1‑150 (MQ=255)                                                                              gaATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGAATgg                                                                         <  2:1125564/150‑1 (MQ=255)                                                                                cagcgggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTg                                                                       >  1:364493‑M2/70‑150 (MQ=255)                                                                                    GGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAAc                                                                   >  1:1187311‑M1/1‑150 (MQ=255)                                                                                     ggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcTGGACCTGGCCCCTgg                                                                                                                                        <  1:799900‑M2/16‑1 (MQ=255)                                                                                     ggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcTGGACCTGGCCCCTgg                                                                                                                                        >  2:799900‑M2/65‑80 (MQ=255)                                                                                         CAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTCGGCTCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGc                                                              >  1:1157829‑M1/1‑150 (MQ=255)                                                                                          AGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGAGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCt                                                             <  2:1028918‑M1/150‑1 (MQ=255)                                                                                            tGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTgg                                                           >  2:1142590/1‑150 (MQ=255)                                                                                                          gagcAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTAGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAg                                             >  2:1280188/1‑150 (MQ=255)                                                                                                                tACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATAACCAATAagagtaacag                                       >  2:1149298/1‑144 (MQ=255)                                                                                                                             aCTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATgg                                                                                                                  >  1:1223482/1‑62 (MQ=255)                                                                                                                             aCTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATgg                                                                                                                  <  2:1223482/62‑1 (MQ=255)                                                                                                                                 cTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTgcagca                      >  1:333199/1‑150 (MQ=255)                                                                                                                                 cTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTgcagca                      >  1:105343/1‑150 (MQ=255)                                                                                                                                  tCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGcagcag                     >  1:656961/1‑150 (MQ=255)                                                                                                                                   cGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAgg                    <  2:1087624/150‑1 (MQ=255)                                                                                                                                    ggTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGCGCCGGAGGCTGCCGAGCTGCAGCAGGc                   <  2:56386/150‑1 (MQ=255)                                                                                                                                           gTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGTTc            >  1:64873/1‑150 (MQ=255)                                                                                                                                                 ccGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGAACTCCAGTAAACCGGGCTGGATTACCACTACGAGCCGGAGGATGCGGGGCGGCGGCAGGCGGCGTTCCGCCTg      >  1:738268/1‑150 (MQ=255)                                                                                                                                                     tGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGTTCCGCCTGCAcc  >  1:696022/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGTTCCGCCTGCACC  >  NC_002947/2228962‑2229259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.