New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2365763	49 (0.930)	3 (0.060)	3/236	NT	5.7%	coding (156/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2365793	52 (1.030)					coding (186/906 nt)	lysR	transcriptional regulator LysR

CAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2365661‑2365763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  <  NC_002947/2365793‑2365646                                                                                                                                                                                                                                                             CAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCA                                                                                                       <  2:1355258/150‑1                       CTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAG                                                                                                      <  1:468663/129‑1                       CTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAG                                                                                                      >  2:468663/1‑129                                                                                                      GCCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGGGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  >  1:1237842/1‑150                                                                                                                                                                                                                                                             CAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2365661‑2365763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCTGGGCCGTCGCCACCAGGCGCCCGCCCTCGCGCTCGAACAGGTTCAGGCCAGTCACCTGCTCCAGCCGCGCCAGTTCGCGGCTGACGGTCGGCTGCGAGGTGAACAGCAGGCGCGCCGCCCCCGTGACACTGCCAGCGGCCATGATG  <  NC_002947/2365793‑2365646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.