New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2365763	49 (0.930)	3 (0.060)	3/236	NT	5.7%	coding (156/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2365793	52 (1.030)					coding (186/906 nt)	lysR	transcriptional regulator LysR

CATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGCCCAA  >  NC_002947/2365646‑2365936                                                                                                                                                    |                                                                                                                                                catcatGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCCCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgc                                                                                                                                               >  1:1237842‑M2/1‑148 (MQ=255)          cGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGtt                                                                                                                                      >  1:613323/1‑150 (MQ=255)              ggCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATc                                                                                                                                  <  1:171823/150‑1 (MQ=255)                   tgtCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAaga                                                                                                                             <  1:860103/150‑1 (MQ=255)                         gggggCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGa                                                                                                                       <  1:104445/150‑1 (MQ=255)                           gggCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGc                                                                                                                     >  1:901881/1‑150 (MQ=255)                             gcggcgCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                                   <  1:240519/150‑1 (MQ=255)                              cggcgCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCggg                                                                                                                  >  2:1128009/1‑150 (MQ=255)                                gcgcgcCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGcc                                                                                                                >  2:497199/1‑150 (MQ=255)                                 cgcgcCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCt                                                                                                               <  1:1413935/150‑1 (MQ=255)                                 cgcgcCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCt                                                                                                               <  2:901881/150‑1 (MQ=255)                                  gcgcCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTa                                                                                                              >  2:462115/1‑150 (MQ=255)                                    gcCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACg                                                                                                            >  1:474754/1‑150 (MQ=255)                                        gctgTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCgg                                                                                                        >  2:949905/1‑150 (MQ=255)                                          tgTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGc                                                                                                      >  1:511170/1‑150 (MQ=255)                                              cACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATc                                                                                                                                  <  1:1349789/118‑1 (MQ=255)                                              cACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATc                                                                                                                                  >  2:1349789/1‑118 (MQ=255)                                                ccTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc                                                                                                <  1:1182995/150‑1 (MQ=255)                                                        ccGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat                                                                                        >  1:1211049/1‑150 (MQ=255)                                                        ccGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat                                                                                        <  1:462115/150‑1 (MQ=255)                                                         cGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgatc                                                                                       <  1:588651/150‑1 (MQ=255)                                                             cGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCCGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                                   >  2:803956/1‑118 (MQ=255)                                                             cGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCCGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                                   <  1:803956/118‑1 (MQ=255)                                                              gTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCttt                                                                                  <  2:95302/150‑1 (MQ=255)                                                              gTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCttt                                                                                  <  1:660249/150‑1 (MQ=255)                                                                  gCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc                                                                                                <  2:341264/132‑1 (MQ=255)                                                                  gCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc                                                                                                >  1:341264/1‑132 (MQ=255)                                                                  gCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGccc                                                                              <  1:1128009/150‑1 (MQ=255)                                                                    cgcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAg                                                                            <  2:1056327/150‑1 (MQ=255)                                                                     gcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCCGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAgg                                                                           <  2:40989/150‑1 (MQ=255)                                                                                   cTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGGCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTc                                                             <  1:447376/150‑1 (MQ=255)                                                                                      gAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAg                                                          <  2:511170/150‑1 (MQ=255)                                                                                      gAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAg                                                          >  2:1391248/1‑150 (MQ=255)                                                                                         cAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAg                                                       <  1:1147081/150‑1 (MQ=255)                                                                                               aCTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCgg                                                 >  1:278226/1‑150 (MQ=255)                                                                                                  ggCCTGAACCTGTGCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTGGGGGGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTg                                              <  1:497199/150‑1 (MQ=255)                                                                                                    ccTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGc                                            >  1:1044444/1‑150 (MQ=255)                                                                                                     cTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtgaacagcag                                                                <  1:468663‑M2/129‑82 (MQ=255)                                                                                                     cTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtgaacagcag                                                                >  2:468663‑M2/1‑48 (MQ=255)                                                                                                      tGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtgaacagcaggcgcgccgcccccgtgacactg                                          <  2:1355258‑M2/150‑104 (MQ=255)                                                                                                       gAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCAt                                         <  1:287466/150‑1 (MQ=255)                                                                                                          ccTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAc                                      <  2:474754/150‑1 (MQ=255)                                                                                                                  aGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACg                                                                                                            <  1:411591/72‑1 (MQ=255)                                                                                                                  aGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACg                                                                                                            >  2:411591/1‑72 (MQ=255)                                                                                                                      cgAGGGCGGGTGTTTCGTGGTGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGCGACAGCCTGCTTGATGCGGCACCGGATCGAGCGCGTTGCCCAGGCCATCGGAAACTTCGGGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCt                          <  1:1391248/150‑1 (MQ=255)                                                                                                                            cgggcgCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCAGCCGGccctgc                                       <  1:558119/131‑5 (MQ=255)                                                                                                                            cgggcgCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCAGCCGGccctgc                                       >  2:558119/1‑127 (MQ=255)                                                                                                                              ggcgCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTAGCCATCACCTGCCTGCCGCTGTTCTCGc                  >  2:281580/1‑150 (MQ=255)                                                                                                                               gcgcCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCa                 >  1:372645/1‑150 (MQ=255)                                                                                                                                   cTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAg                                                       <  2:657311/108‑1 (MQ=255)                                                                                                                                   cTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAg                                                       >  1:657311/1‑108 (MQ=255)                                                                                                                                     gggggCGACGGCCCCGGCGCGGCTGTTGATCGAAGAGGTCGGGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCCACTTCGAGCAGGGCCCGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCtt           <  2:613323/147‑1 (MQ=255)                                                                                                                                       tggCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCttgt         <  2:278226/150‑1 (MQ=255)                                                                                                                                          cGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCATGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGc      <  1:633521/150‑1 (MQ=255)                                                                                                                                          cGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGc      <  1:949905/150‑1 (MQ=255)                                                                                                                                              ggCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGCCCaa  >  1:35340/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                CATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGCCCAA  >  NC_002947/2365646‑2365936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.