New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2436663	56 (1.070)	3 (0.060)	3/226	NT	5.1%	intergenic (+198/‑461)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	= 2436698	61 (1.260)					intergenic (+233/‑426)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase

TATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2436506‑2436663 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagcggcgACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTC  <  NC_002947/2436698‑2436552                                                                                                                                                                                                                                                                                                                   TATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACA                                                                                                                                                             >  2:96142/1‑150   TCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAA                                                                                                                                                           >  1:189910/1‑150   TCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAA                                                                                                                                                           <  2:189910/150‑1                                                     GCTGAGTGAGGCAGTTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGTACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTT                                                                                                         <  2:747819/150‑1                                                                                                           TCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGC                                                                                                                  >  1:55775/1‑87                                                                                                           TCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGC                                                                                                                  <  2:55775/87‑1                                                                                                                                                      AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTA                                                       >  1:989429/1‑103                                                                                                                                                      AAAGCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTA                                                       <  2:989429/103‑1                                                                                                                                                         GCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGC                  <  1:239801/137‑1                                                                                                                                                         GCGGCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGC                  >  2:239801/1‑137                                                                                                                                                            GCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTA                                                       <  2:298021/97‑1                                                                                                                                                            GCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCATAGGAGATTCTA                                                       >  1:298021/1‑97                                                                                                                                                            GCGACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTAGTTACAGAACAGATTGACCAGACTGTATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTC  >  1:96142/1‑150                                                                                                                                                                                                                                                                                                                   TATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACGGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGACAAAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2436506‑2436663 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaagcggcgACTTGGCACCCCACCCCTTCAGGGTTATGCCGAGCCGCCGCTTTGTCGTTACAGAACAGATTGACCAGCCTGGATGCCCCCGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTC  <  NC_002947/2436698‑2436552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.