New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2472145 =	20 (0.380)	4 (0.110)	4/168	NT	20.7%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472269 =	17 (0.480)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

GCTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2472329‑2472145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTT  >  NC_002947/2472269‑2472409                                                                                                                                                                                                                                                                                                                                        gaTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTCCCGACACGACGCTCTTCTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  <  2:398694/148‑1                      GAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                             <  2:376092/150‑1                      GAGTTTAAAAACCGGGCGGAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGA                                                                                                                                                             <  2:181192/150‑1                        GTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTA                                                                                                                                                                                   >  2:290886/1‑126                        GTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTA                                                                                                                                                                                   <  1:290886/126‑1                         TTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  <  1:1214869/126‑1                         TTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  >  2:1214869/1‑126                                   GGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGC                                                                                                                                                <  2:1308891/150‑1                                          GTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCG                                                                                                                                                        <  2:503419/135‑1                                          GTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCG                                                                                                                                                        >  1:503419/1‑135                                                   AGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  >  1:1099482/1‑100                                                   AGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  <  2:1099482/100‑1                                                   AGAGTTTTTACAGCCCGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  <  2:390034/100‑1                                                   AGAGTTTTTACAGCCCGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAG                                                                                                                                                                                  >  1:390034/1‑100                                                                                            CGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCT                                                                                                      >  1:289902/1‑135                                                                                            CGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCT                                                                                                      <  2:289902/135‑1                                                                                             GCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGC                                                                                      >  2:283692/1‑150                                                                                                                GGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGTATCCAGCTGGTACAC                                                                   <  1:283692/150‑1                                                                                                                                                   GTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAACCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCT                                <  2:1308960/150‑1                                                                                                                                                      GGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCC                                                                 <  1:894216/114‑1                                                                                                                                                      GGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCC                                                                 >  2:894216/1‑114                                                                                                                                                             GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACT                                                                                                        <  1:467767/68‑1                                                                                                                                                             GTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACT                                                                                                        >  2:467767/1‑68                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCC                                                    <  2:323890/114‑1                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCGCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCC                                                    >  1:323890/1‑114                                                                                                                                                                    CGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCA               >  2:651090/1‑150                                                                                                                                                                        AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGT                                                                       <  2:918445/90‑1                                                                                                                                                                        AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGT                                                                       >  1:918445/1‑90                                                                                                                                                                         AGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCA          >  1:582657/1‑150                                                                                                                                                                             GCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGC      >  2:113313/1‑150                                                                                                                                                                             GCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACAC                                                                   <  2:1393618/89‑1                                                                                                                                                                             GCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACAC                                                                   >  1:1393618/1‑89                                                                                                                                                                                 GCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTT  >  1:620161/1‑150                                                                                                                                                                                  CACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAAC                                    <  2:1162354/115‑1                                                                                                                                                                                  CACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAAC                                    >  1:1162354/1‑115                                                                                                                                                                                       GCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCA                                                                                 >  2:229267/1‑65                                                                                                                                                                                       GCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCA                                                                                 <  1:229267/65‑1                                                                                                                                                                                                                                                                                                                                        GCTGGCGGGGGTGAGGCTACAGAGTTTAAAAACCGGGCGTAGTGAGATTCAGAGTTTTTACAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2472329‑2472145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTT  >  NC_002947/2472269‑2472409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.