New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2601959	51 (0.970)	4 (0.080)	4/242	NT	7.0%	coding (1393/1575 nt)	PP_2279	head‑to‑tail joining protein
	?	NC_002947	= 2601977	56 (1.080)					coding (1411/1575 nt)	PP_2279	head‑to‑tail joining protein

TGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2601919‑2601959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCAAGGGCGGTGGCCCTTCGGGTCATGTAGTTGCCCCAGTTGATCCGGGAGGCGGCATCAGGAATCTGCATGATGGTGGAGATGAACTGGTCCAGTTTGGTCAGGTCATTGCCACGTCCAAGGGCCTCCATACCCGTCACAATGGTGGGG  <  NC_002947/2601977‑2601829                                                                                                                                                                                                TGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCCAAGGGCGGTGGCCCTTCGGGTCATGTAGTTGCCCCA                                                                                                                  >  1:434452/1‑78 TGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCCAAGGGCGGTGGCCCTTCGGGTCATGTAGTTGCCCCA                                                                                                                  <  2:434452/78‑1                      CTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGGTCATGTAGTTGCCCCAGTTGATCCGGGAGGCGGCATCAGGAATCTGCATGATGGTGGAGATGAACTG                                                               <  1:618597/108‑1                      CTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGGTCATGTAGTTGCCCCAGTTGATCCGGGAGGCGGCATCAGGAATCTGCATGATGGTGGAGATGAACTG                                                               >  2:618597/1‑108                                         CCAAGGGCGGTGGCCCTTCGGGTCATGTAGTTGCCCCAGTTGATCCGGGAGGCGGCATCAGGAATCTGCATGATGGTGGAGATGAACTGGTCCAGTTTGGTCAGGTCATTGCCACGTCCAAGGGCCTCCATACCCGTCACACTGGTGGGG  >  2:179260/1‑150                                                                                                                                                                                                TGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2601919‑2601959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCAAGGGCGGTGGCCCTTCGGGTCATGTAGTTGCCCCAGTTGATCCGGGAGGCGGCATCAGGAATCTGCATGATGGTGGAGATGAACTGGTCCAGTTTGGTCAGGTCATTGCCACGTCCAAGGGCCTCCATACCCGTCACAATGGTGGGG  <  NC_002947/2601977‑2601829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.