New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2601959	51 (0.970)	4 (0.080)	4/242	NT	7.0%	coding (1393/1575 nt)	PP_2279	head‑to‑tail joining protein
	?	NC_002947	= 2601977	56 (1.080)					coding (1411/1575 nt)	PP_2279	head‑to‑tail joining protein

CAAGGGCACTGTTAGCCCCACCATTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTCGCATGATGGAGAAA  >  NC_002947/2601814‑2602108                                                                                                                                                  |                                                                                                                                                      cAAGGGCACTGTTAGCCCCACCATTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAg                                                                                                                                                   <  1:1383484/150‑1 (MQ=255)  aaGGGCACTGTTAGCCCCACCATTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAgg                                                                                                                                                  >  2:1138409/1‑150 (MQ=255)               gCCCCACCATTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTg                                                                                                                                     <  2:815757/150‑1 (MQ=255)                ccccACCAGTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGg                                                                                                                                    >  2:179260‑M2/1‑149 (MQ=255)                  ccaccaTTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGa                                                                                                                                  <  1:45023/150‑1 (MQ=255)                   caccaTTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGAt                                                                                                                                 <  2:120001/150‑1 (MQ=255)                    accaTTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATc                                                                                                                                <  2:614585/150‑1 (MQ=255)                               gggTACGGAGGCCCTTGGACGTGGCAATGACCTGAACAAACTGGACCAGTTCATCTCCACCATTATGCAGATTCCTGATGACGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCATTGGGATCCACACAGACgg                                                                                                                     >  2:296978/1‑150 (MQ=255)                                            cTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGAcc                                                                                                        >  1:1142153/1‑150 (MQ=255)                                            cTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGAcc                                                                                                        >  1:170670/1‑150 (MQ=255)                                             ttGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCg                                                                                                       >  2:527315/1‑150 (MQ=255)                                                 aCGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCg                                                                                                                               >  2:281547/1‑122 (MQ=255)                                                 aCGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCg                                                                                                                               <  1:281547/122‑1 (MQ=255)                                                        aaTGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTc                                                                                            >  1:103544/1‑150 (MQ=255)                                                                 accAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaa                                                                                   >  2:1257041/1‑150 (MQ=255)                                                                 accAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaa                                                                                   <  2:1312644/150‑1 (MQ=255)                                                                 accAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaa                                                                                   >  1:982650/1‑150 (MQ=255)                                                                   cAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaaca                                                                                 >  1:1210884/1‑150 (MQ=255)                                                                     aaCTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaacaac                                                                               >  2:262067/1‑150 (MQ=255)                                                                     aaCTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGaacaac                                                                               <  1:527315/150‑1 (MQ=255)                                                                      aCTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTg                                                                                                                                     <  2:1041548/95‑1 (MQ=255)                                                                      aCTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTg                                                                                                                                     >  1:1041548/1‑95 (MQ=255)                                                                          gACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCCACGGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacag                                                                          <  2:337215/150‑1 (MQ=255)                                                                          gACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacag                                                                          >  1:1228418/1‑150 (MQ=255)                                                                           aCCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagc                                                                         <  2:170670/150‑1 (MQ=255)                                                                           aCCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagc                                                                         <  1:1138409/150‑1 (MQ=255)                                                                             cAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaa                                                                       >  1:190738/1‑150 (MQ=255)                                                                             cAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaa                                                                       <  1:980086/150‑1 (MQ=255)                                                                             cAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCCAAGGGCGGTGGCCCTTCgggtcatgtagttgccccag                                                                                                                 <  1:618597‑M2/108‑21 (MQ=255)                                                                             cAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCCAAGGGCGGTGGCCCTTCgggtcatgtagttgccccag                                                                                                                 >  2:618597‑M2/1‑88 (MQ=255)                                                                               gTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGCTCAACTCGGGCAACTACATGACCCGAAGGGCCACCGCCATTGGGATCGACACAGACGGCCTGGCGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaaca                                                                     >  2:71677/1‑150 (MQ=255)                                                                                ttCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaacag                                                                    <  2:1228418/150‑1 (MQ=255)                                                                                ttCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaa                                                                       <  2:395762/147‑1 (MQ=255)                                                                                ttCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAAcaacagcaa                                                                       >  1:395762/1‑147 (MQ=255)                                                                                      tcCACCATCATGCGGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATgcag                                                              >  1:181956/1‑150 (MQ=255)                                                                                        caccaTCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATgcagca                                                            >  1:612069/1‑150 (MQ=255)                                                                                          ccaTCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACACACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAgg                                                          <  2:851554/150‑1 (MQ=255)                                                                                               atGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATg                                                     <  1:819865/150‑1 (MQ=255)                                                                                                 gCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCa                                                   >  1:615493/1‑150 (MQ=255)                                                                                                     aTTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCaa                                                                                                  <  1:845235/99‑1 (MQ=255)                                                                                                     aTTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCaa                                                                                                  >  2:845235/1‑99 (MQ=255)                                                                                                      ttCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCgg                                              <  2:832307/150‑1 (MQ=255)                                                                                                      ttCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCgg                                              <  2:612069/150‑1 (MQ=255)                                                                                                          tGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCcaagggcggtggcccttcgggtcatgtagttgcccca                                                                                                                  >  1:434452‑M1/1‑41 (MQ=255)                                                                                                          tGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCcaagggcggtggcccttcgggtcatgtagttgcccca                                                                                                                  <  2:434452‑M1/78‑38 (MQ=255)                                                                                                                   cTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGc                                 >  2:440532/1‑150 (MQ=255)                                                                                                                       cGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGAc                                                                                                         <  2:157975/74‑1 (MQ=255)                                                                                                                       cGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGAc                                                                                                         >  1:157975/1‑74 (MQ=255)                                                                                                                         gATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCa                           <  2:982650/150‑1 (MQ=255)                                                                                                                         gATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCa                           <  1:262067/150‑1 (MQ=255)                                                                                                                         gATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCa                           <  2:1142153/150‑1 (MQ=255)                                                                                                                         gATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCa                           <  1:440532/150‑1 (MQ=255)                                                                                                                               cTGGGGCAACTACATGACCCgaagggccaccgcccttggggtcatgtagttgccccagttgatccgggaggcggcatcaggaatctgcatgatggtggagatgaactg                                                               >  2:618597‑M1/1‑20 (MQ=255)                                                                                                                               cTGGGGCAACTACATGACCCgaagggccaccgcccttggggtcatgtagttgccccagttgatccgggaggcggcatcaggaatctgcatgatggtggagatgaactg                                                               <  1:618597‑M1/108‑89 (MQ=255)                                                                                                                               cTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATACAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGc                     <  2:103544/150‑1 (MQ=255)                                                                                                                                tGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGgggtcatgtagttgccccagttgatccgggaggcggcatca                                                                                            <  2:434452‑M2/78‑42 (MQ=255)                                                                                                                                tGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGgggtcatgtagttgccccagttgatccgggaggcggcatca                                                                                            >  1:434452‑M2/1‑37 (MQ=255)                                                                                                                                tGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACGGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCt                    >  2:1022564/1‑150 (MQ=255)                                                                                                                                tGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCt                    <  1:1257041/150‑1 (MQ=255)                                                                                                                                    gCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTc                <  2:615493/150‑1 (MQ=255)                                                                                                                                    gCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTc                >  2:980070/1‑150 (MQ=255)                                                                                                                                      aaCTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTCGc              >  2:743640/1‑150 (MQ=255)                                                                                                                                                cccGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCgg                                  <  1:316099/120‑1 (MQ=255)                                                                                                                                                cccGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCgg                                  >  2:316099/1‑120 (MQ=255)                                                                                                                                                 ccGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGcccc                                    >  1:940308/1‑117 (MQ=255)                                                                                                                                                 ccGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGcccc                                    <  2:940308/117‑1 (MQ=255)                                                                                                                                                 ccGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTCGCATGATGGAGaa   >  2:5141/1‑150 (MQ=255)                                                                                                                                                  ccaagggcggtggcccttcgggtcatgtagttgccccagttgatccgggaggcggcatcaggaatctgcatgatggtggagatgaactggtccagtttggtcaggtcattgccacgtccaagggcctccatacccgtcacactggtgggg  >  2:179260‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CAAGGGCACTGTTAGCCCCACCATTGTGACGGGTATGGAGGCCCTTGGACGTGGCAATGACCTGACCAAACTGGACCAGTTCATCTCCACCATCATGCAGATTCCTGATGCCGCCTCCCGGATCAACTGGGGCAACTACATGACCCGAAGGGCCACCGCCCTTGGGATCGACACAGACGGCCTGGTGAAGACCGATCAAGAGGTCCAGCAGGAACAACAACAGCAACAGATGCAGCAGGCAATGCAGTCGGGCGTAGCCCCGGCAGTGCAGGCCGCTGGTCGCATGATGGAGAAA  >  NC_002947/2601814‑2602108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.