New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2664074	45 (0.860)	5 (0.120)	5/198	NT	11.2%	intergenic (+56/‑107)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	= 2664107	43 (1.020)					intergenic (+89/‑74)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase

CGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2663907‑2664074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaatgcGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATACTCGGCGCTCG  <  NC_002947/2664107‑2663960                                                                                                                                                                                                                                                                                                                              CGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGC                                                                                                                                                                        <  1:1306723/150‑1     TGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGC                                                                                                                                                                    >  1:782247/1‑150            CGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCG                                                                                                                                                             >  1:1098850/1‑150                 GTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCAATAGAGAGGCAACCCGTTTCCATTGAGGGAGCGGGTGTGCCGGCGAAa                                                                                                                                                        >  2:1133182/1‑149                  ttTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATG                                                                                                                                                       >  2:381305/3‑150                                                            tctAGTATGTGGGCGTCGAACGGCGCCAGTTTGGGCCGTGCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAGTGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGC                                                                                                             <  2:282343/147‑1                                                              GAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATAGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGa                                                                                                           >  1:282343/1‑149                                                                                 AGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAG                                                                                        <  1:429695/150‑1                                                                                                 GATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                           >  1:197427/1‑115                                                                                                 GATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG                                                                                                           <  2:197427/115‑1                                                                                                                                                   GAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGtg                      <  2:417520/150‑3                                                                                                                                                            gGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTCGCCGAGGTGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATA             <  1:798173/149‑1                                                                                                                                                              CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATACT           >  2:1098850/1‑150                                                                                                                                                               CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTC                                                                                               >  2:323999/1‑65                                                                                                                                                               CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTC                                                                                               <  1:323999/65‑1                                                                                                                                                                 GCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATACTCGG        >  2:782247/1‑150                                                                                                                                                                 GCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGC                                                      >  1:534559/1‑104                                                                                                                                                                 GCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGC                                                      <  2:534559/104‑1                                                                                                                                                                       GCGTCAGCAGGCGCACAGTGGTTACACGGCCGGGTGCCTTCGCGGGCAGGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATACTCGGCGCTCG  >  2:234780/1‑150                                                                                                                                                                                                                                                                                                                              CGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2663907‑2664074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaatgcGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCTCAAGGGAAACGGGTTGCCTCTCTATAGCTATTCAGCGCTGCTCGATCGGCACGAACTGGCGCTGTTCGACGCCGACATACTCGGCGCTCG  <  NC_002947/2664107‑2663960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.