| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2664074 | 45 (0.860) | 5 (0.120) | 5/198 | NT | 11.2% | intergenic (+56/‑107) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| ? | NC_002947 | = 2664107 | 43 (1.020) | intergenic (+89/‑74) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase | |||||
CGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCG > NC_002947/2663960‑2664255 | cGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCCTGCCCGCGAAGGCACCCGGCCGTGTAACCACTGTGCGCCTGCTGACgc > 2:234780‑M2/1‑148 (MQ=255) ccGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgc > 2:782247‑M2/1‑142 (MQ=255) cgggTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTcgcg > 1:1424003/4‑150 (MQ=255) aGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcggg > 2:1098850‑M2/1‑139 (MQ=255) tATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCACCTCGGCGACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcc < 1:798173‑M2/150‑14 (MQ=255) cacgaACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcacgcccgctc < 2:417520‑M2/148‑23 (MQ=255) gAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGACGCAACCCGTTTCCCTTGAGGGAGCGGGCGTTCCCCCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCca < 1:447439/150‑1 (MQ=255) aCAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCcaca < 1:962716/150‑1 (MQ=255) aCAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCcaca > 1:144542/1‑150 (MQ=255) cgcCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTa < 1:725684/150‑1 (MQ=255) ccAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACg < 1:381305/150‑1 (MQ=255) gATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTcc < 1:1388331/150‑1 (MQ=255) gATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTcc > 2:1145286/1‑150 (MQ=255) cagcGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCt < 1:1308464/150‑1 (MQ=255) gcgcTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgc > 1:534559‑M2/1‑96 (MQ=255) gcgcTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgc < 2:534559‑M2/104‑9 (MQ=255) tAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGc < 2:1275301/150‑1 (MQ=255) cTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTcc < 2:1164752/130‑1 (MQ=255) cTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTcc > 1:1164752/1‑130 (MQ=255) tataGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCt < 1:951282/136‑1 (MQ=255) tataGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCt > 2:951282/1‑136 (MQ=255) ggagGCAGGCCGTGTCCCGTGAGGGGGCGGGCGTGCCGGAGAGTGCGCCCGTCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGTGCCTGATTCCa < 2:798173/149‑1 (MQ=255) gagGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCat < 2:512806/150‑1 (MQ=255) ggCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatga < 1:1345425/150‑1 (MQ=255) ggCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGACTGATACCatga < 2:708266/150‑1 (MQ=255) gCAACCCGTTTCCCTTGAGGGAGCGGGCTTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGGGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCaggat > 2:560787/1‑150 (MQ=255) cccGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGAtt < 2:1151082/139‑1 (MQ=255) cccGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGAtt > 1:1151082/1‑139 (MQ=255) cGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTc > 1:4746/1‑138 (MQ=255) cGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTc < 2:4746/138‑1 (MQ=255) cTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcacgcccgctcccacaagggaaacgggttgcctctctatagctattcagcgctgctcgatcggcacgaactggcgct < 1:429695‑M2/150‑89 (MQ=255) ttGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATAcc < 1:220480/150‑1 (MQ=255) gggAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCaa < 2:1054954/150‑1 (MQ=255) gAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgg > 2:323999‑M2/1‑55 (MQ=255) gAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgg < 1:323999‑M2/65‑11 (MQ=255) cccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGc > 1:893580/1‑150 (MQ=255) tcgcgaATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcacgcccgctccctcaagggaaacgggttgcctctctatagctattcagcgctgctctatcggcacgaactggcgctgttcgacgccgacatactc > 1:282343‑M2/2‑43 (MQ=255) ccGCGAATGCACCCGGGCTTGTAACCACTGTGCGCCTGCTGACGGATTGGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa < 2:1424003/150‑1 (MQ=255) ccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcacgcccgctccctcaagggaaacgggttgcctctctatagctattcagcgctgctcgatc < 2:197427‑M2/115‑73 (MQ=255) ccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcattcgcgggcacgcccgctccctcaagggaaacgggttgcctctctatagctattcagcgctgctcgatc > 1:197427‑M2/1‑43 (MQ=255) ccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCa > 1:1345314/1‑150 (MQ=255) ccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCACGATGAACACTGCATACCGCAAGCACCTGCCAGGCa > 2:1161775/1‑150 (MQ=255) ccGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATAACGGGAGGAACACTGCATACCGCAAGCACCTGCCAGGcc > 2:690609/1‑149 (MQ=255) cgcgAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCAc > 1:163729/1‑150 (MQ=255) gcgAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACgcactcgcgggcacgcccgctccctcaagggaaacgggttgcctctctatagctattcagcgctgctcgcacggcccaaactggcgccgttcgacgcccacatactaga < 2:282343‑M2/150‑110 (MQ=255) gAATGCGCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGa < 1:1133182/150‑1 (MQ=255) aTGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGc < 2:1084120/99‑1 (MQ=255) aTGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGc > 1:1084120/1‑99 (MQ=255) cACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTgg < 1:534930/150‑1 (MQ=255) aCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGa > 1:735737/1‑150 (MQ=255) ccgggCCTTGTAACCACTGTGCACCTGCTGACGCATCAGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTGCGACTCCTGTGACCGAGCCTGATGCGATGATGAACACTGCATACCGCAAGCACCTCCCCGGCACCGACCTggcc > 2:65715/4‑148 (MQ=255) ccGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCCGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGcc > 1:826575/1‑133 (MQ=255) ccGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCCGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGcc < 2:826575/133‑1 (MQ=255) ccTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACtt < 2:144542/150‑1 (MQ=255) ccTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACtt < 2:893580/150‑1 (MQ=255) ttGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCg > 1:1111928/1‑150 (MQ=255) cACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGt > 1:1095110/1‑53 (MQ=255) cACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGt < 2:1095110/53‑1 (MQ=255) cagctgctgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACAGCAAACACCTGCAAGGCACCGACCTGGACTACTTCGACGCCCGCgcggcg > 1:1119217/4‑150 (MQ=255) tgctgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTggca > 1:238490/1‑123 (MQ=255) tgctgACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTggca < 2:238490/125‑3 (MQ=255) aCGCATTCGCGGGCACGCCCGCTCCAACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCg > 1:634727/1‑150 (MQ=255) | CGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGAATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCG > NC_002947/2663960‑2664255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |