New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2678319 =	45 (0.860)	4 (0.080)	4/234	NT	8.3%	coding (617/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	2678340 =	46 (0.920)					coding (638/1320 nt)	PP_2348	sensor histidine kinase

AGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCATGGCCGAGGTTACCGAGGGCATTGCGTGAGCGGCGCAGGCTGTCTTCGGTATGGCTAAGCAAGTGGTTGATCTGCCCCACCAGCGGTACCAACTCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2678472‑2678319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAG  >  NC_002947/2678340‑2678488                                                                                                                                                                                                                                                                                                                 AGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCATGGCCGAGGTTACCGAGGGCATTGCGTGAGCGGCGCAAGCTGTCTTCGGTACGGCTAAGGCAGTGGTTGATCTGCCCCACCAGCCGTACCAACTCG                                                                                                                                                           >  2:620897/1‑150                                                                                                                                   CCACCAGCGGTACCAACTCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAAT                                                                                            <  1:528257/83‑1                                                                                                                                   CCACCAGCGGTACCAACTCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAAT                                                                                            >  2:528257/1‑83                                                                                                                                    CACCAGCGGTACCAACTCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAA                                                                                                                    >  1:1193923/1‑58                                                                                                                                    CACCAGCGGTACCAACTCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAA                                                                                                                    <  2:1193923/58‑1                                                                                                                                                      GCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCC      >  1:516482/1‑150                                                                                                                                                       CTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCG     >  1:963221/1‑150                                                                                                                                                          GTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAG  <  2:782136/150‑1                                                                                                                                                          GTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAG  <  2:913152/150‑1                                                                                                                                                          GTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAG  <  2:963221/150‑1                                                                                                                                                                                                                                                                                                                 AGGCGGTCACTGGAAGCCAGGCTCAGCAACACCGCCAGCGGCGTCTTCAGCGCATGGCCGAGGTTACCGAGGGCATTGCGTGAGCGGCGCAGGCTGTCTTCGGTATGGCTAAGCAAGTGGTTGATCTGCCCCACCAGCGGTACCAACTCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2678472‑2678319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGACCGCCTGCAGGGTCTGCCGGAG  >  NC_002947/2678340‑2678488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.