New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2678319 =	45 (0.860)	4 (0.080)	4/234	NT	8.3%	coding (617/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	2678340 =	46 (0.920)					coding (638/1320 nt)	PP_2348	sensor histidine kinase

CGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGA  >  NC_002947/2678170‑2678466                                                                                                                                                      |                                                                                                                                                    ctccggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccac                                                                                                                                                     <  2:963221‑M1/1‑1 (MQ=255) ctccggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccac                                                                                                                                                     <  2:913152‑M1/1‑1 (MQ=255) ctccggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccac                                                                                                                                                     <  2:782136‑M1/1‑1 (MQ=255)    cggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccaCCAg                                                                                                                                                  >  1:963221‑M1/147‑150 (MQ=255)     ggcagaccctgcaggcggtcactggaagccaggctcagcaacaccgccagcggcgtcttcagcgcatggccgaggttaccgagggcattgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccaCCAGc                                                                                                                                                 >  1:516482‑M1/146‑150 (MQ=255)      tGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCg                                                                                                                                                >  2:663015/1‑150 (MQ=255)       gggCATGGGCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGa                                                                                                                                               >  2:1076928/1‑150 (MQ=255)        ggCATGGGCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCGGCTGCAGCAGTCGCGTCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAg                                                                                                                                              <  1:958709/150‑1 (MQ=255)               gCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGGCCAGCGAGTTGGTAc                                                                                                                                       >  2:183493/1‑150 (MQ=255)                ccTGGTGGCGCTGATCCTTATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTAcc                                                                                                                                      <  2:393896/150‑1 (MQ=255)                          cTGATCCTGATTCTGGCGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTgggg                                                                                                                            <  1:1014792/150‑1 (MQ=255)                             aTCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAg                                                                                                                         >  2:278414/1‑150 (MQ=255)                              tCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGa                                                                                                                        <  1:1116389/150‑1 (MQ=255)                              tCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGa                                                                                                                        <  2:323427/150‑1 (MQ=255)                               ccTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGAt                                                                                                                       <  1:663015/150‑1 (MQ=255)                                        ggTGCTGCAGTGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAgcacc                                                                                                                     <  2:351602/143‑5 (MQ=255)                                        ggTGCTGCAGTGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAgcacc                                                                                                                     >  1:351602/1‑139 (MQ=255)                                           gctgcAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCt                                                                                                           >  1:137894/1‑150 (MQ=255)                                             tgcAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATGAACCACTTGCTTa                                                                                                         >  1:620897/1‑150 (MQ=255)                                                 gcgcATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCa                                                                                                     >  1:913152/1‑150 (MQ=255)                                                    cATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATAc                                                                                                  <  1:636628/150‑1 (MQ=255)                                                      tCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCg                                                                                                >  1:351146/1‑150 (MQ=255)                                                          ggTTACCCGCTCGCTGAGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGa                                                                                            >  2:858246/1‑150 (MQ=255)                                                                ccGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGaa                                                                                              <  2:2411/142‑1 (MQ=255)                                                                ccGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGaa                                                                                              >  1:2411/1‑142 (MQ=255)                                                                 cgctcgctGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTg                                                                                     >  1:429356/1‑150 (MQ=255)                                                                  gctcgctGCGGCCGCTGGAGCGGGCGCGCCAGCAGCTCACCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTCGCTTAGCCATACCGAAGACAGCCTgc                                                                                    <  1:785598/150‑1 (MQ=255)                                                                  gctcgctGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGc                                                                                                       >  1:906914/1‑131 (MQ=255)                                                                  gctcgctGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGc                                                                                                       <  2:906914/131‑1 (MQ=255)                                                                    tcgctGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTgcgc                                                                                  >  2:862922/1‑150 (MQ=255)                                                                                   gAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGa                                                                                            <  1:170483/125‑1 (MQ=255)                                                                                   gAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGa                                                                                            >  2:170483/1‑125 (MQ=255)                                                                                     gCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAg                                                                                             <  1:155927/122‑1 (MQ=255)                                                                                     gCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAg                                                                                             >  2:155927/1‑122 (MQ=255)                                                                                       gggCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCg                                                               >  2:517117/1‑150 (MQ=255)                                                                                           attgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccaCCAGCGAGTTGGTACCGCtggtgg                                                                                                                              <  1:528257‑M1/24‑1 (MQ=255)                                                                                           attgcgtgagcggcgcaggctgtcttcggtatggctaagcaagtggttgatctgccccaCCAGCGAGTTGGTACCGCtggtgg                                                                                                                              >  2:528257‑M1/60‑83 (MQ=255)                                                                                               cagcagATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACtt                                                                                                              >  2:12996/1‑95 (MQ=255)                                                                                               cagcagATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACtt                                                                                                              <  1:12996/95‑1 (MQ=255)                                                                                               cagcagATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTc                                                       <  1:278414/150‑1 (MQ=255)                                                                                                          ccAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCtggtgg                                                                                                                              <  1:754503/68‑1 (MQ=255)                                                                                                          ccAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCtggtgg                                                                                                                              >  2:754503/1‑68 (MQ=255)                                                                                                          ccAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGa                                                                                            <  1:726427/102‑1 (MQ=255)                                                                                                          ccAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGa                                                                                            >  2:726427/1‑102 (MQ=255)                                                                                                                   ttcggtatggctaagcaagtggttgatctgccccaCCAGCGAGTTGGTACCGCtggtg                                                                                                                               <  2:1193923‑M1/23‑1 (MQ=255)                                                                                                                   ttcggtatggctaagcaagtggttgatctgccccaCCAGCGAGTTGGTACCGCtggtg                                                                                                                               >  1:1193923‑M1/36‑58 (MQ=255)                                                                                                                          cAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCATGCAATGCCCTCGGTAACATCGGCCATGCGCTGAAGACGCCGCTGGCg                            <  2:137894/150‑1 (MQ=255)                                                                                                                          cAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCg                            <  2:510869/150‑1 (MQ=255)                                                                                                                           aGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGAcgc                                    >  1:1149147/1‑141 (MQ=255)                                                                                                                           aGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGAcgc                                    <  2:1149147/141‑1 (MQ=255)                                                                                                                                tCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTg                      >  2:774290/1‑150 (MQ=255)                                                                                                                                    aGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGa                  <  2:731601/150‑1 (MQ=255)                                                                                                                                    aGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGa                  <  1:862922/150‑1 (MQ=255)                                                                                                                                        ggATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCt              <  2:351146/150‑1 (MQ=255)                                                                                                                                                 ggTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAg     <  2:429356/150‑1 (MQ=255)                                                                                                                                                    gCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGa  >  2:268274/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CGGCCTGGGCATGGGCCTGGTGGCGCTGATCCTGATTCTGGTGCTGCAGCGCATCACGGTTACCCGCTCGCTGCGGCCGCTGGAGCGGGCGCGCCAGCAGATCGCCCAGCTGCAGCAGGGGCAGCGCTCGCAGCTGGATGCCGAGGTGCCCAGCGAGTTGGTACCGCTGGTGGGGCAGATCAACCACTTGCTTAGCCATACCGAAGACAGCCTGCGCCGCTCACGCAATGCCCTCGGTAACCTCGGCCATGCGCTGAAGACGCCGCTGGCGGTGTTGCTGAGCCTGGCTTCCAGTGA  >  NC_002947/2678170‑2678466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.