| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2773866 | 52 (0.990) | 3 (0.060) | 3/234 | NT | 6.0% | coding (827/1053 nt) | calA | coniferyl alcohol dehydrogenase |
| ? | NC_002947 | = 2773912 | 45 (0.900) | coding (873/1053 nt) | calA | coniferyl alcohol dehydrogenase | |||||
TCTCCACCGATGCCGAGCAGATGCGCGCCGCTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2773713‑2773866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacccCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTC < NC_002947/2773912‑2773769 TCTCCACCGATGCCGAGCAGATGCGCGCCGCTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCG > 2:77966/1‑150TCTCCACCGATGCCGAGCAGATGCGCGCCGCTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCG > 2:960212/1‑150 TCCACCGATGCCGAGCAGATGCGCGCCGCTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGAC < 1:705832/150‑1 TCCACCGATGCCGAGCAGATGCGCGCCACTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCTGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGAC > 2:543039/1‑150 TGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCG > 2:555876/1‑150 GACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCC > 1:1318538/1‑98 GACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCC < 2:1318538/98‑1 CACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGAT < 1:555876/150‑1 ACCATTCCGGTGCAGCACGACCTCAACCTGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATC < 1:543039/150‑1 CGACCCCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTC < 1:931096/150‑1 TCTCCACCGATGCCGAGCAGATGCGCGCCGCTGCCGGTCGTTTCGATTTCCTGCTCGACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2773713‑2773866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacccCGCCAGCACCCGGCGCTTCATCACCAGATTGGCCGCATGCAATGCCGGGTCGATCGGTTCGATCAGGCCGACCAGGATGTGCACACCGTCGAACTTCAGCGTTTCCAGGTACGGGTTGAGGTCGTGCTGCACCGGAATGGTGTC < NC_002947/2773912‑2773769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |