New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2773866	52 (0.990)	3 (0.060)	3/234	NT	6.0%	coding (827/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	= 2773912	45 (0.900)					coding (873/1053 nt)	calA	coniferyl alcohol dehydrogenase

GACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTAC  >  NC_002947/2773769‑2774056                                                                                                                                                |                                                                                                                                                 gACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGgggtcg                                                                                                                                            <  1:931096‑M2/150‑7 (MQ=255)    acCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTg                                                                                                                                         >  2:270156/1‑150 (MQ=255)      cATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGAt                                                                                                                                       >  2:192120/1‑150 (MQ=255)      cATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGAt                                                                                                                                       >  2:266051/1‑150 (MQ=255)        ttCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCg                                                                                                                                     <  1:192120/150‑1 (MQ=255)          ccGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCggg                                                                                                                                   <  1:874297/150‑1 (MQ=255)          ccGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCggg                                                                                                                                   <  2:884786/150‑1 (MQ=255)               gcagcaCGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGAt                                                                                                                              >  2:583776/1‑150 (MQ=255)                       aCCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCgaga                                                                                                                      <  2:958289/150‑1 (MQ=255)                            aaCCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAg                                                                                                                 <  2:1274187/150‑1 (MQ=255)                              cccGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGa                                                                                                               >  2:1227392/1‑150 (MQ=255)                                     gtagAAACGCTGAAGTTCGACGGTGGGCACTTCCTGGTCGGGCGGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGTGTCGTTGATCGGGGTGATTGCCGAGACTCAGGAAGTGCTg                                                                                                        <  2:579496/147‑1 (MQ=255)                                      tGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTgg                                                                                                       >  1:1273474/1‑150 (MQ=255)                                        gAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTg                                                                                                        >  1:1189484/1‑147 (MQ=255)                                        gAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTg                                                                                                        <  2:1189484/147‑1 (MQ=255)                                        gAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGAc                                                                                                     >  1:1001108/1‑150 (MQ=255)                                              cTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTgc                                                                                               <  1:77966/150‑1 (MQ=255)                                               tGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTgcg                                                                                              >  1:481771/1‑150 (MQ=255)                                               tGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTgcg                                                                                              >  2:1327888/1‑150 (MQ=255)                                                   gTTCGACTGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGa                                                                                          <  2:931096/150‑1 (MQ=255)                                                    ttCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAg                                                                                         >  1:1070563/1‑150 (MQ=255)                                                    ttCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAg                                                                                         >  1:794957/1‑150 (MQ=255)                                                      cGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCggggg                                                                                                                                 >  2:196588/1‑108 (MQ=255)                                                      cGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCggggg                                                                                                                                 <  1:196588/108‑1 (MQ=255)                                                       gACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATc                                                                                                                                      <  2:380307/102‑1 (MQ=255)                                                       gACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATc                                                                                                                                      >  1:380307/1‑102 (MQ=255)                                                                 acaTCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGtt                                                                            <  2:846489/150‑1 (MQ=255)                                                                   aTCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTg                                                                                                           <  1:1358271/117‑1 (MQ=255)                                                                   aTCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTg                                                                                                           >  2:1358271/1‑117 (MQ=255)                                                                                   tCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTgg                                                          <  1:266051/150‑1 (MQ=255)                                                                                      aaCCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCAc                                                                                      <  2:479019/119‑1 (MQ=255)                                                                                      aaCCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCAc                                                                                      >  1:479019/1‑119 (MQ=255)                                                                                         cGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATcc                                                    <  2:1273474/150‑1 (MQ=255)                                                                                          gATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGgggtcgatcggttcgatcaggccgaccaggatgtgcacaccgtcgaacttcagcgtttccaggtacaggttgaggtcgtgctgcaccggaatggt                                                   <  1:543039‑M2/150‑96 (MQ=255)                                                                                           aTCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGgggtcgatcggttcgatcaggccgaccaggatgtgcacaccgtcgaacttcagcgtttccaggtacgggttgaggtcgtgctgcaccggaatggtg                                                  <  1:555876‑M2/150‑97 (MQ=255)                                                                                           aTCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCCGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGc                                                  >  1:224068/1‑150 (MQ=255)                                                                                           aTCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGc                                                  >  1:475553/1‑150 (MQ=255)                                                                                             cGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCaa                                                <  2:1001108/150‑1 (MQ=255)                                                                                                 ccGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCa                                                                                                                  >  1:851616/1‑80 (MQ=255)                                                                                                 ccGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCa                                                                                                                  <  2:851616/80‑1 (MQ=255)                                                                                                 ccGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGGGTCATCGAGATGCTGGATATCCGCAACATc                                            <  1:1327888/150‑1 (MQ=255)                                                                                                  cGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGgggtcgatcggttcgatcaggccgaccaggatgtgcacaccgtcgaacttcagcgtttccaggtacgggttgaggtcgtgctgcaccggaatggtgtcgagca                                           >  2:555876‑M2/1‑47 (MQ=255)                                                                                                  cGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCa                                           >  2:965504/1‑150 (MQ=255)                                                                                                         gCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGc                                    <  2:929824/150‑1 (MQ=255)                                                                                                             gCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTAt                                <  2:1070563/150‑1 (MQ=255)                                                                                                                   aaTCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCgg                          <  1:843419/150‑1 (MQ=255)                                                                                                                    aTCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTg                                                           <  2:36354/116‑1 (MQ=255)                                                                                                                    aTCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTg                                                           >  1:36354/1‑116 (MQ=255)                                                                                                                              gaAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCgg               <  2:481771/150‑1 (MQ=255)                                                                                                                                 gcgcCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGa            >  1:1343027/1‑150 (MQ=255)                                                                                                                                  cgcCGGGTGCTGGCGGGGTCGTTGATCGGGGGTCTGGGCTAGACTCAGGAAGTGGTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGAt           <  2:113961/150‑1 (MQ=255)                                                                                                                                           cTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTAc  <  1:1227392/150‑1 (MQ=255)                                                                                                                                                ggggTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTgg                                                          >  2:1268066/1‑89 (MQ=255)                                                                                                                                                ggggTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTgg                                                          <  1:1268066/89‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GACACCATTCCGGTGCAGCACGACCTCAACCCGTACCTGGAAACGCTGAAGTTCGACGGTGTGCACATCCTGGTCGGCCTGATCGAACCGATCGACCCGGCATTGCATGCGGCCAATCTGGTGATGAAGCGCCGGGTGCTGGCGGGGTCGTTGATCGGGGGGATTGCCGAGACTCAGGAAGTGCTGGACTTCTGCGCCGAGCACGACATCCGTTGCGATATCGAGATGCTGGATATCCGCAACATCAACCAGGCCTATGAGCGGATGATTGCCGGTGATGTGAAGTAC  >  NC_002947/2773769‑2774056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.