New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2808398 =	51 (0.970)	4 (0.080)	4/232	NT	8.2%	coding (356/375 nt)	PP_2462	hypothetical protein
	?	NC_002947	2808428 =	41 (0.830)					intergenic (+11/+141)	PP_2462/PP_mr35	hypothetical protein/cspA regulatory region

CGGGATTGCCTGCGAAACCGACTGTAGGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2808548‑2808398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACC  >  NC_002947/2808428‑2808570                                                                                                                                                                                                                                                                                                        CGGGATTGCCTGCGAAACCGACTGTAGGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  <  1:852738/150‑1  GGGATTGCCTGCGAAACCGACTGTAGGGTGAATGGCAGGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGGG                                                                                                                                                 >  1:1153773/1‑150          CTGCGAAACCGACTGTAGGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATGAAACGCTGATGACGCGGGGGaccctg                                                                                                                                         >  2:661811/1‑144                           GGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  >  1:39402/1‑124                           GGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  <  2:39402/124‑1                                                                   CCGCTCCTACAAGGCGAGCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  >  2:729290/1‑84                                                                   CCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  <  1:729290/84‑1                                                                     GCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  >  2:73831/1‑82                                                                     GCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  <  1:73831/82‑1                                                                              AGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  >  2:1152153/1‑73                                                                              AGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGG                                                                                                                                                  <  1:1152153/73‑1                                                                                            GCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCG                                                                                                                                                   <  2:668057/58‑1                                                                                            GCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCG                                                                                                                                                   >  1:668057/1‑58                                                                                                                 GCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGGGGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCA                                  >  1:984166/1‑150                                                                                                                 GCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGGGGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCA                                  <  2:984166/150‑1                                                                                                                          CCCGCGTGCATCAACCGCAGTTGACGCGGGGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGG                                                                                         >  2:1425640/1‑86                                                                                                                          CCCGCGTGCATCAACCGCAGTTGACGCGGGGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGG                                                                                         <  1:1425640/86‑1                                                                                                                                                 ACGCGGGGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTAGCAGGCAATCCCGCCCCTTCAGATGATTCATCACC  >  2:1375188/1‑150                                                                                                                                                                                                                                                                                                        CGGGATTGCCTGCGAAACCGACTGTAGGGTGAATGGCACGGGCTTTGCCCGTGTTCGCGGGTGAACCCGCTCCTACAAGGCGACCGCGCAGGCTTTTCACATTTTGCGCAAGGCAGTTGCCCCCGCGTGCATCAACCGCAGTTGACGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2808548‑2808398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggGGCAACTGCCTTGCGCAAAATGTGAAAAGCCTGCGCGGTCGCCTTGTAGGAGCGGGTTCACCCGCGAACACGGGCAAAGCCCGTGCCATTCACCCTACAGTCGGTTTCGCAGGCAATCCCGCCCCTTCAGATGATGCATCACC  >  NC_002947/2808428‑2808570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.