| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2813357 = | 48 (0.910) | 7 (0.140) | 5/234 | NT | 13.8% | coding (499/1017 nt) | pheS | phenylalanine‑‑tRNA ligase subunit alpha |
| ? | NC_002947 | 2813386 = | 42 (0.840) | coding (528/1017 nt) | pheS | phenylalanine‑‑tRNA ligase subunit alpha | |||||
ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2813511‑2813357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcgGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGCA > NC_002947/2813386‑2813534 ATATCGCGCTCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGG < 2:1104833/150‑1ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGG < 1:161372/150‑1 ATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGG > 1:1238288/1‑138 ATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGG < 2:1238288/138‑1 ATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTAT < 1:12320/88‑1 ATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTAT > 2:12320/1‑88 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCTCG > 1:7377/1‑150 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGAT < 1:509563/115‑1 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGAT > 2:509563/1‑115 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGC < 1:590326/74‑1 GCACCTGCACCGGCGAGGTGTGGGTGCGGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGC > 2:590326/1‑74 GGTGCGGACCAGTGAGTCCACCCAGCCGTCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAA < 2:7377/150‑1 GGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGCA < 1:524571/150‑1 ATATCGCGATCGATCAGCAGGCCTTCGACCTGGTGGAACATCGGCGAGTGGGTGATATCCGAGTCGCAGCGGTATACGCGGCCCGGGCACACAATGCGAATGGGCGGCTGGGTGGACTCCATGGTCCGCACCTGCACCGGCGAGGTGTGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2813511‑2813357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgcgGACCATGGAGTCCACCCAGCCGCCCATTCGCATTGTGTGCCCGGGCCGCGTATACCGCTGCGACTCGGATATCACCCACTCGCCGATGTTCCACCAGGTCGAAGGCCTGCTGATCGATCGCGATATCAACTTCGCCGACCTCAAGGGCA > NC_002947/2813386‑2813534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |