| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3023014 | 43 (0.820) | 6 (0.120) | 6/234 | NT | 13.4% | coding (3509/3519 nt) | PP_2638 | cellulose synthase operon protein C |
| ? | NC_002947 | = 3023030 | 37 (0.740) | intergenic (+6/‑332) | PP_2638/dapA‑II | cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase | |||||
CCTAAGTGACCAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3022862‑3023014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgaTTGCCGTCACCGCCACTCGCTGGAAGGCTCCAGCGGTGTCACCGGCAGGGCTAGGTTGCCTCGCCACGGTTCGAACAGGTAGCGCAGGTAGAGCATGCCATGGCTAGGCGCATAGTCATCGCTATGCTGC < NC_002947/3023030‑3022901 CCTAAGTGACCAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAG > 2:1273985/1‑150 TATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACTCGCTG < 1:944349/120‑1 TATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACTCGCTG > 2:944349/1‑120 TGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACTC > 1:467463/1‑79 TGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACTC < 2:467463/79‑1 GAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGC < 1:446874/54‑1 GAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGC > 2:446874/1‑54 ACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGGAAGGCTCCAGCGGTGTCACCGGCAGGGCTAGGTTGCCTCGCCACGGTTCGAACAGGTAGCGCAGGTAGAGCATGCCATGGCTAGGCGCATAGTCATCGCTATGCTG > 2:1006413/1‑150 CCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGGAAGGCTCCAGCGGTGTCACCGGCAGGGCTAGGTTGCCTCGCCACGGTTCGAACAGGTAGCGCAGGTAGAGCATGCCATGGCTAGGCGCATAGTCATCGCTATGCTGC < 1:1006413/150‑1 CCTAAGTGACCAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3022862‑3023014‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgaTTGCCGTCACCGCCACTCGCTGGAAGGCTCCAGCGGTGTCACCGGCAGGGCTAGGTTGCCTCGCCACGGTTCGAACAGGTAGCGCAGGTAGAGCATGCCATGGCTAGGCGCATAGTCATCGCTATGCTGC < NC_002947/3023030‑3022901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |