New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3023014	43 (0.820)	6 (0.120)	6/234	NT	13.4%	coding (3509/3519 nt)	PP_2638	cellulose synthase operon protein C
	?	NC_002947	= 3023030	37 (0.740)					intergenic (+6/‑332)	PP_2638/dapA‑II	cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase

CCAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCA  >  NC_002947/3022871‑3023162                                                                                                                                                |                                                                                                                                                     ccAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                >  1:470338/1‑150 (MQ=255) ccAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                <  1:46365/150‑1 (MQ=255)  cAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCgg                                                                                                                                               >  2:1124743/1‑150 (MQ=255)  cAGTGGGTACTGGGCGCCCGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCgg                                                                                                                                               <  2:8979/150‑1 (MQ=255)      gggTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTCCCAGCGAGTGGCGGTGAc                                                                                                                                           <  1:1321930/150‑1 (MQ=255)                  gcggcTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGc                                                                                                                               <  1:1124743/150‑1 (MQ=255)                     gcTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGtt                                                                                                                            <  2:712572/150‑1 (MQ=255)                      cTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTg                                                                                                                           >  1:20697/1‑150 (MQ=255)                         cGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCaa                                                                                                                        <  2:637374/150‑1 (MQ=255)                         cGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCaa                                                                                                                        <  2:58090/150‑1 (MQ=255)                               gcagcaTAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACtcgctggaaggctccagcgg                                                                                                                  <  1:1006413‑M2/150‑21 (MQ=255)                                cagcaTAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGATTGCCGTCACCGCCACtcgctggaaggctccagcggt                                                                                                                 >  2:1006413‑M2/1‑129 (MQ=255)                                cagcaTAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGgcgc                                                                                                                 >  1:343862/1‑150 (MQ=255)                                   caTAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGTAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGcc                                                                                                              >  1:1250335/1‑150 (MQ=255)                                         gATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACg                                                                                                        <  1:540186/150‑1 (MQ=255)                                            gACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACgggg                                                                                                     <  1:649193/150‑1 (MQ=255)                                               tATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAttgccgtcaccgccactcgctg                                                                                                                                >  2:944349‑M1/1‑98 (MQ=255)                                               tATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAttgccgtcaccgccactcgctg                                                                                                                                <  1:944349‑M1/120‑23 (MQ=255)                                               tATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGa                                                                                                  <  2:470338/150‑1 (MQ=255)                                               tATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGa                                                                                                  >  2:93835/1‑150 (MQ=255)                                                  gcgcCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGc                                                                                               <  1:93835/150‑1 (MQ=255)                                                              ggCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCCAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGtt                                                                                   <  2:819721/150‑1 (MQ=255)                                                              ggCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGtt                                                                                   <  2:20697/150‑1 (MQ=255)                                                                        aCCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                >  1:471954/1‑79 (MQ=255)                                                                        aCCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                <  2:471954/79‑1 (MQ=255)                                                                        aCCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGc                                                                         <  2:343862/150‑1 (MQ=255)                                                                         ccTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCAc                                                                                                         >  2:724112/1‑117 (MQ=255)                                                                         ccTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCAc                                                                                                         <  1:724112/117‑1 (MQ=255)                                                                              gcTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCaa                                                                                                                        >  1:744644/1‑97 (MQ=255)                                                                              gcTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCaa                                                                                                                        <  2:744644/97‑1 (MQ=255)                                                                                tACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACgccgcc                                                                 <  1:876277/150‑1 (MQ=255)                                                                                 aCCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGccc                                                                >  2:672190/1‑150 (MQ=255)                                                                                    tGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAttgccgtcaccgccactc                                                                                                                                    >  1:467463‑M1/1‑61 (MQ=255)                                                                                    tGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAttgccgtcaccgccactc                                                                                                                                    <  2:467463‑M1/79‑19 (MQ=255)                                                                                     gatCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                >  1:275752/3‑66 (MQ=255)                                                                                     gTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCg                                                                                                                                                <  2:275752/66‑1 (MQ=255)                                                                                               tGGCGAGGCAACTTCGTCCTGCAGGACACACCGCTGGAGCATTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCACTATCCCGc                                                  <  1:1273708/150‑1 (MQ=255)                                                                                                      gCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGtt                                                                                   <  2:710390/110‑1 (MQ=255)                                                                                                      gCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGtt                                                                                   >  1:710390/1‑110 (MQ=255)                                                                                                         aCCTAGCCATGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACg                                        >  2:449043/1‑150 (MQ=255)                                                                                                           cTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAg                                                                                       <  2:218457/101‑1 (MQ=255)                                                                                                           cTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAg                                                                                       >  1:218457/1‑101 (MQ=255)                                                                                                           cTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGACGCGCCCTCACTGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCa                                      >  1:530221/1‑150 (MQ=255)                                                                                                                   gCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATa                                              <  2:1051066/134‑1 (MQ=255)                                                                                                                   gCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATa                                              >  1:1051066/1‑134 (MQ=255)                                                                                                                       gTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAgg                                                                          <  1:111190/102‑1 (MQ=255)                                                                                                                       gTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAgg                                                                          >  2:111190/1‑102 (MQ=255)                                                                                                                            acCGCTGGAGCCTTCCAGCGAgtggcggtgacggcaatcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggtagcgcaggtagagcatgccatggctaggcgcatagtcatcgctatgctg                     >  2:1006413‑M1/1‑21 (MQ=255)                                                                                                                             ccGCTGGAGCCTTCCAGCGAgtggcggtgacggcaatcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggtagcgcaggtagagcatgccatggctaggcgcatagtcatcgctatgctgc                    <  1:1006413‑M1/150‑131 (MQ=255)                                                                                                                                cTGGAGCTTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCca                 <  2:1210746/150‑1 (MQ=255)                                                                                                                                        ttCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAAc         >  2:95932/1‑150 (MQ=255)                                                                                                                                           cAGCGAGTGGCGGTGACGGCAAtcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggtagcgcaggtagagcatgccatggctaggcgcata                                    <  1:944349‑M2/120‑99 (MQ=255)                                                                                                                                           cAGCGAGTGGCGGTGACGGCAAtcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaacaggtagcgcaggtagagcatgccatggctaggcgcata                                    >  2:944349‑M2/1‑22 (MQ=255)                                                                                                                                             gCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCGAGCCATACATAAGCAAGGGGCTTGCCAACATGTCCAACTCAAACCAGGc    >  2:602415/1‑150 (MQ=255)                                                                                                                                              cGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCGTTCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGcc   >  1:743592/1‑150 (MQ=255)                                                                                                                                               gAGTGGCGGTGACGGCAAtcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaaca                                                                         <  2:467463‑M2/79‑62 (MQ=255)                                                                                                                                               gAGTGGCGGTGACGGCAAtcgctggaaggctccagcggtgtcaccggcagggctaggttgcctcgccacggttcgaaca                                                                         >  1:467463‑M2/1‑18 (MQ=255)                                                                                                                                               gAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCa  >  1:906294/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                     CCAGTGGGTACTGGGCGGCGGCTTCGACTGGCAGCATAGCGATGACTATGCGCCTAGCCATGGCATGCTCTACCTGCGCTACCTGTTCGAACCGTGGCGAGGCAACCTAGCCCTGCCGGTGACACCGCTGGAGCCTTCCAGCGAGTGGCGGTGACGGCAATCGCTGCGTTGCAAGGGGCGCGCCTGCACGGGGCGATGCGGGCCAAGGGTTGACACCAGGCACGCCGCCCCACCATTATCCAGCCATACCTACGCAACGGGCTTGCCAACATGTCCACATCCAACCACGCCA  >  NC_002947/3022871‑3023162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.