New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3052093	53 (1.010)	4 (0.080)	3/238	NT	7.4%	coding (750/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3052110	49 (0.960)					coding (767/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

GTGCTGATCCGCGACATCACCGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3051941‑3052093 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTCGCGCAGACGCGACTCGGCCTGGCTGCGCTC  <  NC_002947/3052110‑3052079                                                                                                                                                                                           GTGCTGCTCCGCGACATCACCGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAG                                     >  1:547080/1‑150 GTGCTGATCCGCGACATCACCGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCCGCCAG                                     <  2:595602/150‑1 GTGCTGATCCGCGACATCACCGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAG                                     >  1:157025/1‑150                                ACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCTCGCGCAGACGCGACTCGGCCTGGCTGC      <  1:879889/150‑1                                    CGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCTCGCGCAGACGCGACTCGGCCTGGCTGCGCTC  <  1:1026424/150‑1                                                     AGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCTCGCGCAGACGCGACTCGGCCTGGCTGC      >  1:897427/1‑129                                                     AGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCTCGCGCAGACGCGACTCGGCCTGGCTGC      <  2:897427/129‑1                                                                                                                                                                                           GTGCTGATCCGCGACATCACCGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3051941‑3052093 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTCGCGCAGACGCGACTCGGCCTGGCTGCGCTC  <  NC_002947/3052110‑3052079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.