New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3052093	53 (1.010)	4 (0.080)	3/238	NT	7.4%	coding (750/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3052110	49 (0.960)					coding (767/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

CGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAATGCTGCCCACC  >  NC_002947/3051961‑3052256                                                                                                                                                      |                                                                                                                                                   cGAGCGCCGCAACACCTCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGa                                                                                                                                                    <  1:693987/150‑1 (MQ=255) cGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGa                                                                                                                                                    <  1:1138646/150‑1 (MQ=255)         gcAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGTCCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAgc                                                                                                                                            <  2:1187391/150‑1 (MQ=255)           aaCACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAgcgc                                                                                                                                          >  2:163298/1‑150 (MQ=255)             cacCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGa                                                                                                                                        <  2:630347/150‑1 (MQ=255)               ccGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAgg                                                                                                                                      <  1:367297/150‑1 (MQ=255)               ccGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAgg                                                                                                                                      <  2:157025/150‑1 (MQ=255)                 gCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGcc                                                                                                                                    >  2:270892/1‑150 (MQ=255)                     aGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGc                                                                                                                                >  2:382598/1‑150 (MQ=255)                      ggCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCa                                                                                                                               >  1:1001616/1‑150 (MQ=255)                       gCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAg                                                                                                                              <  1:1143716/150‑1 (MQ=255)                           tGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCa                                                                                                                          <  2:1227875/150‑1 (MQ=255)                              aCCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAAcc                                                                                                                       >  2:91807/1‑150 (MQ=255)                                  ggCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTc                                                                                                                   <  1:91807/150‑1 (MQ=255)                                       tgatacgccTGGTGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGaaaa                                                                                                              <  2:710025/143‑1 (MQ=255)                                       aTCAGGACCGGGAGGAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGaaaa                                                                                                              <  2:547080/150‑1 (MQ=255)                                       aTCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGaaaa                                                                                                              <  2:1001616/150‑1 (MQ=255)                                        tCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAAc                                                                                                             >  2:650944/1‑150 (MQ=255)                                           gCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTc                                                                                                                   >  1:2942/1‑141 (MQ=255)                                           gCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTc                                                                                                                   <  2:2942/141‑1 (MQ=255)                                              ccTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGtt                                                                                                       >  1:1132585/1‑150 (MQ=255)                                                 ggAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAg                                                                                                         >  2:1311457/1‑145 (MQ=255)                                                 ggAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAg                                                                                                         <  1:1311457/145‑1 (MQ=255)                                                 ggAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCt                                                                                                    <  1:382598/150‑1 (MQ=255)                                                  gAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAg                                                                                                                                       <  2:227915/114‑1 (MQ=255)                                                  gAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAg                                                                                                                                       >  1:227915/1‑114 (MQ=255)                                                   aGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGCAAACCAAGTTCCTgg                                                                                                  <  2:1026977/150‑1 (MQ=255)                                                     cAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAATTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCt                                                                                                >  2:105153/1‑150 (MQ=255)                                                                     gcACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAg                                                                                                                              <  2:788318/104‑1 (MQ=255)                                                                     gcACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAg                                                                                                                              >  1:788318/1‑104 (MQ=255)                                                                     gcACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAAc                                                                                                                        <  2:1278897/110‑1 (MQ=255)                                                                     gcACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAAc                                                                                                                        >  1:1278897/1‑110 (MQ=255)                                                                             gAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCaa                                                                        >  1:80997/1‑150 (MQ=255)                                                                                       gCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTCCTGAAAGCACTGAAcc                                                              >  2:80564/1‑149 (MQ=255)                                                                                          tCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGa                                                                                                                                  <  2:258634/79‑1 (MQ=255)                                                                                          tCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGa                                                                                                                                  >  1:258634/1‑79 (MQ=255)                                                                                                 ccAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCt                                                    >  1:995621/1‑150 (MQ=255)                                                                                                  cAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTg                                                   >  1:591074/1‑150 (MQ=255)                                                                                                    gTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGtt                                                 >  2:1077366/1‑150 (MQ=255)                                                                                                         tgcGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAg                                                                                                                              >  1:769640/1‑68 (MQ=255)                                                                                                         tgcGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAg                                                                                                                              <  2:769640/68‑1 (MQ=255)                                                                                                           cgcgAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGt                                          <  2:1345596/150‑1 (MQ=255)                                                                                                            gcgAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTg                                         >  1:1351972/1‑150 (MQ=255)                                                                                                                    gAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTcc                                                                                                     <  2:774872/82‑1 (MQ=255)                                                                                                                    gAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTcc                                                                                                     >  1:774872/1‑82 (MQ=255)                                                                                                                     aaGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAg                                                                                                                                       >  2:1302311/1‑47 (MQ=255)                                                                                                                     aaGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAg                                                                                                                                       <  1:1302311/47‑1 (MQ=255)                                                                                                                     aaGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCg                                >  2:168428/1‑150 (MQ=255)                                                                                                                       gagCGCAGCCAGGCCGAGTCGCGTCTGCGCGAggcctggctgcgctcttcgatttcgcgcagcaactggtcgttgaggctggtcagttcggcagtgcgctcgcgcacccgttgctccaggtgctgatacgcctggtgcaacgcctgtgcg                              <  1:1026424‑M2/150‑119 (MQ=255)                                                                                                                           gcAGCCAGGCCGAGTCGCGTCTGCGCGAggcctggctgcgctcttcgatttcgcgcagcaactggtcgttgaggctggtcagttcggcagtgcgctcgcgcacccgttgctccaggtgctgatacgcctggtgcaacgcctgtgcggtgt                          <  1:879889‑M2/150‑123 (MQ=255)                                                                                                                           gcAGCCAGGCCGAGTCGCGTCTGCGCGAggcctggctgcgctcttcgatttcgcgcagcaactggtcgttgaggctggtcagttcggcagtgcgctcgcgcacccgttgctccaggtgctgatacgcct                                               <  2:897427‑M2/129‑102 (MQ=255)                                                                                                                           gcAGCCAGGCCGAGTCGCGTCTGCGCGAggcctggctgcgctcttcgatttcgcgcagcaactggtcgttgaggctggtcagttcggcagtgcgctcgcgcacccgttgctccaggtgctgatacgcct                                               >  1:897427‑M2/1‑28 (MQ=255)                                                                                                                            cAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGa                         <  2:1351972/150‑1 (MQ=255)                                                                                                                                         tCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAAt            >  1:526842/1‑150 (MQ=255)                                                                                                                                             gTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAAtgctg        <  1:1337727/150‑1 (MQ=255)                                                                                                                                             gTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAAtgctg        >  2:1350601/1‑150 (MQ=255)                                                                                                                                                   gcgAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAATGCTGCCCAcc  >  1:1342894/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGAGCGCCGCAACACCGCACAGGCGTTGCACCAGGCGTATCAGCACCTGGAGCAACGGGTGCGCGAGCGCACTGCCGAACTGACCAGCCTCAACGACCAGTTGCTGCGCGAAATCGAAGAGCGCAGCCAGGCCGAGTCGCGTCTGCGCGAGGCCAAGCGCGAGGCCGAGCAGGCCAACCTGTCGAAAACCAAGTTCCTGGCTGCGGTCAGCCATGACCTGCTGCAACCGCTGAACGCGGCGCGGCTGTTCACCAGTGCGTTGCTCGAGCGCGATGAGCCGCAAAATGCTGCCCACC  >  NC_002947/3051961‑3052256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.