| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3057644 | 45 (0.860) | 4 (0.080) | 4/238 | NT | 7.9% | coding (971/1194 nt) | PP_5538 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 3057687 | 50 (0.980) | coding (928/1194 nt) | PP_5538 | ABC transporter substrate‑binding protein | |||||
GTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3057562‑3057644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGCGCTGCAGCAACTGCTGCTCAGCGAGCAATTGCCGCTGGACGGTTTCAAGGGGCGCAAGCTCAGTTACCGCCCGTGGAACGGCGAACTGCGCCAGCCGATC < NC_002947/3057687‑3057541 GTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGCGCTGCA < 1:352953/136‑1GTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGCGCTGCA > 2:352953/1‑136 TGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGC > 1:420742/1‑113 TGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCAAACCTCGCGC < 2:420742/113‑1 CGCAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGCGCTGCAGCAACTGCTGCTCAGCGAGCAATTGCCGCTGGACGGTTTCAAGGGGCGCAAGCTCAGTTACCGCCCGTGGAACGGCGAACTGCGCCAGCCGATC < 1:876640/150‑1 GTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3057562‑3057644‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAGTGTCGCCAGTGCGGCCAGCAAGCTGCGCCTGGCCGAACCTCGCGCGCTGCAGCAACTGCTGCTCAGCGAGCAATTGCCGCTGGACGGTTTCAAGGGGCGCAAGCTCAGTTACCGCCCGTGGAACGGCGAACTGCGCCAGCCGATC < NC_002947/3057687‑3057541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |