New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3057644 | 45 (0.860) | 4 (0.080) | 4/238 | NT | 7.9% | coding (971/1194 nt) | PP_5538 | ABC transporter substrate‑binding protein |
? | NC_002947 | = 3057687 | 50 (0.980) | coding (928/1194 nt) | PP_5538 | ABC transporter substrate‑binding protein |
CTCCTGCGGCGAGGTGCTGACCAGGGCGCGGGGCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCAACTGCGCCGCCCCGAAGGTTTCCACCGTCT > NC_002947/3057496‑3057791 | ctcctGCGGCGAGGTGCTGAGCAGGGCGCGGGGCTGAACCAACGGGATCGGCTGGGGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTTAAACCGTCCAGCGGCAATTTGTCGCTGAGCAGCAGGTGCTGCcgcgcgcg > 2:164851/1‑150 (MQ=255) ctGCGGCGAGGTGCTGACCAGGGCGCGGGGCTGAACCAACGGGATCGGCTCGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAgg > 2:50425/1‑150 (MQ=255) gcgAGGTGCTGACCAGGGCGCGGGGCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCANCGGCAANTGCTCGCTGAGCNGCAGTTGCTGCAGCGCGCGAGGTTCgg < 1:1276045/150‑1 (MQ=255) aCCAGGGCGCGGGGCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGc < 2:589705/150‑1 (MQ=255) ggCGCGGGGCCGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGCCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCt > 1:31537/1‑150 (MQ=255) cgcgGGGCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTgg > 1:230980/1‑150 (MQ=255) gCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTCACTGCGCCTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCAc > 2:1058991/1‑150 (MQ=255) aaCCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGc < 1:887413/150‑1 (MQ=255) cAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGac > 1:393556/1‑150 (MQ=255) gATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTgcg < 1:876640‑M2/150‑4 (MQ=255) tCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGca < 2:1394121/150‑1 (MQ=255) cgcAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGAGAGCGAGGTTCGGCCAGGCGAAGCTTGTTAGCGTCAGTTTCTACACTGCGCACAGCCATc < 2:728749/150‑1 (MQ=255) ttCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAggc > 1:304656/1‑150 (MQ=255) gCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAggcggc > 2:846375/1‑150 (MQ=255) gTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCagtgtcgccagtgcggccagcaagctgcgcctggccgaacctcgcgcgctgca > 2:352953‑M1/1‑83 (MQ=255) gTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCagtgtcgccagtgcggccagcaagctgcgcctggccgaacctcgcgcgctgca < 1:352953‑M1/136‑54 (MQ=255) gTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGaa < 2:1175524/150‑1 (MQ=255) cGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACg < 1:1400560/150‑1 (MQ=255) gggCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACgg < 1:214604/150‑1 (MQ=255) cGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCGCGGtca > 1:347512/1‑150 (MQ=255) aaCTGAGCTTACGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAg > 2:1095624/1‑120 (MQ=255) aaCTGAGCTTACGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAg < 1:1095624/120‑1 (MQ=255) cTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATc < 2:393556/150‑1 (MQ=255) tGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCagtgtcgccagtgcggccagcaagctgcgcctggccgaacctcgcgc > 1:420742‑M1/1‑66 (MQ=255) tGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCagtgtcgccagtgcggccagcaagctgcgcctggccaaacctcgcgc < 2:420742‑M1/113‑48 (MQ=255) tGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATcc > 2:118821/1‑150 (MQ=255) gctccTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCgg > 2:596088/4‑150 (MQ=255) ccccTTGAACCCGTCCCGCGCTTATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCACGCGCAGCTCTCTTCCCGCACTGGCTACACTGCGCATAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGc < 1:1142083/150‑1 (MQ=255) cccTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGcc > 2:889590/1‑150 (MQ=255) cTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTg > 2:1113279/1‑150 (MQ=255) ttGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTgg < 1:50425/150‑1 (MQ=255) ttGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTgg > 2:1136539/1‑150 (MQ=255) aaCCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTTTTGGCCGCACTGACCAGACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCt > 1:101347/1‑150 (MQ=255) aCCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTc < 2:230980/150‑1 (MQ=255) tcagcgagCAATTGC‑CGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTc < 1:994939/138‑1 (MQ=255) tcagcgagCAATTGC‑CGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTc > 2:994939/8‑145 (MQ=255) cAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCg > 1:396053/1‑150 (MQ=255) cAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCg > 2:488302/1‑150 (MQ=255) aGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGACGAACTGGTAATACTGCGCATATGTATCCATGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGt < 1:174343/150‑1 (MQ=255) ggCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGtttt < 1:488302/150‑1 (MQ=255) gCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGttttt < 1:565501/150‑1 (MQ=255) aaTTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATc > 2:1098418/1‑117 (MQ=255) aaTTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATc < 1:1098418/117‑1 (MQ=255) aaTTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGc > 2:609744/1‑150 (MQ=255) aTTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCa > 2:783976/1‑150 (MQ=255) gCTCGCTGAGCAGCAGTTGCTGCAGCGCGCTAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAgc < 1:526439/117‑1 (MQ=255) gCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAgc > 2:526439/1‑117 (MQ=255) gCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCAACTgcgc < 1:609744/150‑1 (MQ=255) tGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCCGGCGGCGAAGTCACGGTCATTCATc > 1:89551/1‑107 (MQ=255) tGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATc < 2:89551/107‑1 (MQ=255) agcagTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCAACTGCGCCGCCCCg > 2:947168/1‑150 (MQ=255) tgcAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTgcgcgctgcagcaactgctgctcagcgagcaattgccgctggacggtttcaaggggcgcaagctcagttaccgcccgtggaac < 1:352953‑M2/136‑84 (MQ=255) tgcAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTgcgcgctgcagcaactgctgctcagcgagcaattgccgctggacggtttcaaggggcgcaagctcagttaccgcccgtggaac > 2:352953‑M2/1‑53 (MQ=255) aGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCAACTGCGCCGCCCCGAAGGTTTCCAcc < 1:1058991/150‑1 (MQ=255) cgcgcgAGGTTCGGCCAGGCGCAGCTTGCTAGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGtttt > 1:1414056/1‑118 (MQ=255) cgcgcgAGGTTCGGCCAGGCGCAGCTTGCTAGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGtttt < 2:1414056/118‑1 (MQ=255) gcgcgAGGTTTGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTgcgcgctgcagcaactgctgctcagcgagcaattgccgctggacggtttcaaggggcgcaagctca < 2:420742‑M2/113‑67 (MQ=255) gcgcgAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTgcgcgctgcagcaactgctgctcagcgagcaattgccgctggacggtttcaaggggcgcaagctca > 1:420742‑M2/1‑47 (MQ=255) cgcagtgtcgccagtgcggccagcaagctgcgcctggccgaacctcgcgcgctgcagcaactgctgctcagcgagcaattgccgctggacggtttcaaggggcgcaagctcagttaccgcccgtggaacggcgaactgcgccagccgatc < 1:876640‑M1/150‑148 (MQ=255) | CTCCTGCGGCGAGGTGCTGACCAGGGCGCGGGGCTGAACCAACGGGATCGGCTGGCGCAGTTCGCCGTTCCACGGGCGGTAACTGAGCTTGCGCCCCTTGAAACCGTCCAGCGGCAATTGCTCGCTGAGCAGCAGTTGCTGCAGCGCGCGAGGTTCGGCCAGGCGCAGCTTGCTGGCCGCACTGGCGACACTGCGCACAGCCATCCAGGCGGCGAAGTCACGGTCATTCATCCAGCGCCCGGCCTGGGCCTCGAAGCGTTTTTGCAACTGCGCCGCCCCGAAGGTTTCCACCGTCT > NC_002947/3057496‑3057791 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |