| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3217070 = | 55 (1.050) | 7 (0.140) | 4/234 | NT | 11.2% | coding (2942/3129 nt) | mexD | multidrug RND transporter MexD |
| ? | NC_002947 | 3217105 = | 59 (1.180) | coding (2977/3129 nt) | mexD | multidrug RND transporter MexD | |||||
TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3217105‑3217070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAGGCAGA > NC_002947/3217105‑3217253 TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAG > 1:111717/1‑150TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAG > 2:537446/1‑150TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGC < 1:769589/139‑1TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGC > 2:769589/1‑139TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGT > 1:110125/1‑136TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGT < 2:110125/136‑1 GCGCCGGAGGCGATGGCCAGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGT < 1:537446/150‑1 gctGCAAGCCAGCGCGCCATCGGTACCTGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAG < 2:655705/147‑1 GGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTT > 1:215193/1‑99 GGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTT < 2:215193/99‑1 GCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAGGCA > 2:1305056/1‑150 AAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAGGCAGA > 1:103316/1‑150 TTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3217105‑3217070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcaAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTTCCCCGGTGCAACAGGCTGTCGAGGAGGCAGA > NC_002947/3217105‑3217253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |