New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3219398	63 (1.200)	5 (0.100)	5/228	NT	7.5%	intergenic (‑98/+80)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
	?	NC_002947	= 3219419	65 (1.340)					intergenic (‑119/+59)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein

TGGACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3219242‑3219398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC  <  NC_002947/3219419‑3219271                                                                                                                                                                                                                                                                                                                    TGGACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGAGCCTCAGAAGATTCAACACTCGATAGCGTGCGGGCATTGGGAATGTAAACGGCTTATAGGTCACCCATTTGAGCAAATAATGGCTCAATCAAGGC                                                                                                                                                              <  2:519780/150‑1       ACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATATGAGCAAATAATGGCTCAATCAAGGCTCGCAG                                                                                                                                                        <  2:1012350/150‑1         GATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCA                                                                                                                                                         <  1:1298349/147‑1         GATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCA                                                                                                                                                         >  2:1298349/1‑147                                         CATCGGTAGGGAGCTGCATCAGAAGATTCCACACTGCTTATCGTGCGGGCATTGTGAATGAAAACGGCTCATGGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGTAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTT                                                                                                                      <  1:708735/150‑1                                                                                                             TCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCT                                                                                                                               >  1:892161/1‑73                                                                                                             TCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCT                                                                                                                               <  2:892161/73‑1                                                                                                               ATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGC                                                                                                                             <  1:1315562/73‑1                                                                                                               ATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGC                                                                                                                             >  2:1315562/1‑73                                                                                                                                                     GCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGC          <  2:725589/150‑1                                                                                                                                                      CTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCG         >  2:1273267/1‑150                                                                                                                                                       TCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGC        <  1:762158/150‑1                                                                                                                                                         GCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTAC                  >  1:598838/1‑138                                                                                                                                                         GCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTAC                  <  2:598838/138‑1                                                                                                                                                          CAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATCTCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTG     <  2:1262785/150‑1                                                                                                                                                             GCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTATGATGCACCTCCCTACCGATGAGCGCCTGCTC  >  2:1248586/1‑150                                                                                                                                                                                                                                                                                                                    TGGACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3219242‑3219398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCTC  <  NC_002947/3219419‑3219271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.