| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3478133 = | 46 (0.880) | 3 (0.060) | 3/234 | NT | 6.5% | coding (514/543 nt) | PP_3089 | hypothetical protein |
| ? | NC_002947 | 3478187 = | 42 (0.840) | coding (460/543 nt) | PP_3089 | hypothetical protein | |||||
GGCGGTCAGCGACCTGCCCGTTGAAGAAATCAGCTTCAACTTTGCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTGGGTGGCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3478251‑3478133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggTGTAGGTGGTCTTGATGCGGGCAAAGTTGAA > NC_002947/3478187‑3478217 GGCGGTCAGCGACCTGCCCGTTGAAGAAATCAGCTTCAACTTTGCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTGGGTGGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAA < 2:1293494/150‑1 CCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTGGGTGGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAG < 1:945722/79‑1 CCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTGGGTGGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAG > 2:945722/1‑79 GGCGGTCAGCGACCTGCCCGTTGAAGAAATCAGCTTCAACTTTGCCCGCATCAAGACCACCTACACCCAGCAGAACCGCACCGACGGCCAGGCCGGCGGCAACATCGTGGGTGGCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3478251‑3478133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggTGTAGGTGGTCTTGATGCGGGCAAAGTTGAA > NC_002947/3478187‑3478217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |