New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3478133 =	46 (0.880)	3 (0.060)	3/234	NT	6.5%	coding (514/543 nt)	PP_3089	hypothetical protein
	?	NC_002947	3478187 =	42 (0.840)					coding (460/543 nt)	PP_3089	hypothetical protein

GCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCACTTCTTCCATGTCGATGG  >  NC_002947/3478041‑3478324                                                                                                                                                   |                                                                                                                                          gcCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAAAACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTa                                                                                                                                        >  1:1219871/1‑150 (MQ=255)  ccGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAg                                                                                                                                       <  2:640648/150‑1 (MQ=255)      aaaaCCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAggtgg                                                                                                                                   <  2:692351/150‑1 (MQ=255)                 cgcTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        <  1:354242/150‑1 (MQ=255)                 cgcTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        <  2:459018/150‑1 (MQ=255)                         aaCACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGCCGGTGGTCTTTATGCGGGCAAAGtt                                                                                                                <  2:1195408/150‑1 (MQ=255)                            ggcggtcagcgacctgcccgttgaagaaatcagcttcaactttgcccgcatcaagaccacctacacccagcagaaccgcaccgacggccaggccggcggcaacatcgtgggtggctgggTGTAGGTGGTCTTGATGCGGGCAAAGTTGaa                                                                                                             <  2:1293494‑M2/31‑1 (MQ=255)                             caGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGAAAGGTAGaat                                                                                                            <  2:355226/150‑2 (MQ=255)                                    ccgAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGAttt                                                                                                     >  2:93337/1‑150 (MQ=255)                                       aaGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATttctt                                                                                                  <  1:1208683/150‑1 (MQ=255)                                       aaGCGGCCCATGGTTCGGTACGTGCGTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATttctt                                                                                                  <  2:655645/150‑1 (MQ=255)                                                   gTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGt                                                                                      >  1:651704/1‑150 (MQ=255)                                                    ttCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTc                                                                                     >  1:901796/1‑150 (MQ=255)                                                              ttcaactttgcccgcatcaagaccacctacaCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGcc                                                                           <  2:1293494‑M1/119‑1 (MQ=255)                                                              gCTTAGGCAAACACTTTGTTCGTGGTGCGGTCACAGCGACCCACGATGTTGTCGTCGGCCTGGCAGTCAGTGCGGTTCTGCTGGGTGTTGGTGGTCTTGTCGCGAGAAAAGTTGAAGGTGATTTATTCAACGGCGAGGTGGCTGACCggc                                                                           >  2:425977/1‑148 (MQ=255)                                                                  aGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        <  1:900165/101‑1 (MQ=255)                                                                  aGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        >  2:900165/1‑101 (MQ=255)                                                                      aaaCACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAGAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTc                                                                   >  1:1246379/1‑150 (MQ=255)                                                                      aaaCACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTc                                                                   <  2:881745/150‑1 (MQ=255)                                                                      aaaCACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTc                                                                   >  1:413264/1‑150 (MQ=255)                                                                          acTTTGTTTGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGGCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGGTGAAGCTGATTTCTTCTTCGGGCAGGTCGCTGACCGCCATGTCTTcacca                                                               <  2:851642/150‑1 (MQ=255)                                                                          acTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATttctt                                                                                                  >  1:588396/1‑115 (MQ=255)                                                                          acTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATttctt                                                                                                  <  2:588396/115‑1 (MQ=255)                                                                           cTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTcaccac                                                              >  1:588679/1‑150 (MQ=255)                                                                            tttGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGAt                                                                                                                            <  2:993559/87‑1 (MQ=255)                                                                            tttGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGAt                                                                                                                            >  1:993559/1‑87 (MQ=255)                                                                                  cgcgGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGtt                                                       <  2:1246379/150‑1 (MQ=255)                                                                                            tCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGc                                                                                   >  1:1201835/1‑112 (MQ=255)                                                                                            tCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGc                                                                                   <  2:1201835/112‑1 (MQ=255)                                                                                              ccagcagaaccgcaccgacggccaggccggcggcaacatcgtgggtggctgggTGTAGGTGGTCTTGATGCGGGCAAAg                                                                                                                  >  2:945722‑M2/54‑79 (MQ=255)                                                                                              ccagcagaaccgcaccgacggccaggccggcggcaacatcgtgggtggctgggTGTAGGTGGTCTTGATGCGGGCAAAg                                                                                                                  <  1:945722‑M2/26‑1 (MQ=255)                                                                                                      ccacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        >  1:680793/1‑65 (MQ=255)                                                                                                      ccacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCgg                                                                                                                        <  2:680793/65‑1 (MQ=255)                                                                                                       cacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGt                                                                       >  2:831734/1‑113 (MQ=255)                                                                                                       cacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGt                                                                       <  1:831734/113‑1 (MQ=255)                                                                                                       cacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGAc                                  >  1:665275/1‑150 (MQ=255)                                                                                                       cacGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGAc                                  <  2:1049338/150‑1 (MQ=255)                                                                                                                gccgccGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGac                         <  2:1257628/150‑1 (MQ=255)                                                                                                                 ccgccgGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGa                                            <  1:1249891/130‑1 (MQ=255)                                                                                                                 ccgccgGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGa                                            >  2:1249891/1‑130 (MQ=255)                                                                                                                   gccgGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGaccac                      <  2:651704/150‑1 (MQ=255)                                                                                                                   gccgGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGaccac                      <  2:901796/150‑1 (MQ=255)                                                                                                                        ccTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCActt                 <  1:93337/150‑1 (MQ=255)                                                                                                                          tgcccGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCActtct               <  1:425977/147‑1 (MQ=255)                                                                                                                          tGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCActtct               >  1:412186/1‑150 (MQ=255)                                                                                                                               gTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCCCTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCACTTCTTCCAt          <  2:413264/150‑1 (MQ=255)                                                                                                                                tCGGTGCGGTTCTGCTGGGAGTCGGAGGTCTAGATCCAGGCAAAGTTGAAGCTGATTTTTTTAGCGGTCAGGTCGCTGACCGGCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCACTTCTTCCATg         >  2:1231572/1‑150 (MQ=255)                                                                                                                                       ggTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCACTTCTTCCATGTCGATgg  >  2:500468/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                          GCCGGAAAACCCGGCGCGCTGCGGAACACAGGCCGCCGAAGCGGCCCATGGTTCGGTACGTGCTTAGGCAAACACTTTGTTCGCGGTGCGGTCCCAGCCACCCACGATGTTGCCGCCGGCCTGGCCGTCGGTGCGGTTCTGCTGGGTGTAGGTGGTCTTGATGCGGGCAAAGTTGAAGCTGATTTCTTCAACGGGCAGGTCGCTGACCGCCTTGTCTTCACCACTCTGGTTGCCACCGGCGACAAACTTGACCGAAGAGACCACCACTTCTTCCATGTCGATGG  >  NC_002947/3478041‑3478324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.