New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3514136 = | 58 (1.100) | 6 (0.120) | 4/238 | NT | 9.7% | coding (2761/4158 nt) | PP_3108 | rhs family protein |
? | NC_002947 | 3514155 = | 55 (1.080) | coding (2780/4158 nt) | PP_3108 | rhs family protein |
CAGGCCTTGCGCCCCATGGCGTCATAACCGAAGCAACTGGTGAGCTTGCCCTGGGTCCGGTACACCTCGCGGTGCAGGTCATCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3514221‑3514136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCA > NC_002947/3514155‑3514302 CAGGCCTTGCGCCCCATGGCGTCATAACCGAAGCAACTGGTGAGCTTGCCCTGGGTCCGGTACACCTCGCGGTGCAGGTCATC > 1:999869/1‑83 CAGGCCTTGCGCCCCATGGCGTCATAACCGAAGCAACTGGTGAGCTTGCCCTGGGTCCGGTACACCTCGCGGTGCAGGTCATC < 2:999869/83‑1 CTCGCGGTGCAGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCNCCAGTTGCTTCGGTTATGACGCCATGGG > 1:336553/1‑76 CTCGCGGTGCAGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATA > 1:121510/1‑150 CTCGCGGTGCAGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGG < 2:336553/76‑1 CTCGCGGTGCAGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGG < 1:953742/75‑1 CTCGCGGTGCAGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGG > 2:953742/1‑75 AGGTCATCGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATACCTCGTTGCT < 2:121510/150‑1 CGCGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAG > 2:548167/1‑150 CGAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCA < 2:548143/150‑1 CAGGCCTTGCGCCCCATGGCGTCATAACCGAAGCAACTGGTGAGCTTGCCCTGGGTCCGGTACACCTCGCGGTGCAGGTCATCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3514221‑3514136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgAGGTGTACCGGACCCAGGGCAAGCTCACCAGTTGCTTCGGTTATGACGCCATGGGGCGCAAGGCCTGGCAGTTTGCCTCGACCTTGCCGGCCGACAAGCTTTCGCAGGTGCACAACACCGGCATCAATACCTCGTTGCTGGTCGAGCA > NC_002947/3514155‑3514302 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |