| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3674020 | 45 (0.860) | 3 (0.060) | 3/234 | NT | 5.8% | intergenic (+134/+6) | PP_3237/PP_3238 | universal stress protein family protein/transcriptional regulator PyrR |
| ? | NC_002947 | = 3674044 | 54 (1.080) | coding (555/573 nt) | PP_3238 | transcriptional regulator PyrR | |||||
AATATTCTGGTGGTGTAGGGCTGTGCGGCTGACGACTGCAAGAACGACGAACGGGTGGCGACGGGTAGTCAGTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3673869‑3674020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgAACAGGCGATACCGCCTGATTCAACGGCCGGGTGCGGGGCCTTCTCGTCAGGATTGAGAATCAAGGCCTCCAGGCGCTACCTTGCACCGGGTGGTGCTGAGCCACTGACTACCCGTCGCCACCCGTTCGTCGTTCTTGCAGTCGTCAGC < NC_002947/3674044‑3673896 AATATTCTGGTGGTGTAGGGCTGTGCGGCTGACGACTGCAAGAACGACGAACGGGTGGCGACGGGTAGTCAGTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGC > 2:1391063/1‑150AATATTCTGGTGGTGTAGGGCTGTGCGGCTGACGACTGCAAGAACGACGAACGGGTGGCGACGGGTAGTCAGTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGC > 2:31399/1‑150 CTGCAAGAACGACGAACGGGTGGCGACGGGTAGTCAGTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGCCGAACAGGCGATACCGCCTGATTCAACGGCCGGGT < 1:181361/150‑1 GTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGCCGAACAGGCGATACCGCCTGATTCAACGGCC > 1:382967/1‑110 GTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGCCGAACAGGCGATACCGCCTGATTCAACGGCC < 2:382967/110‑1 GTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGC < 1:1125299/61‑1 GTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGC > 2:1125299/1‑61 GAACAGGCGATACCGCCTGATTCAACGGCCGGGTGCGGGGCCTTCTCGTCAGGATTGAGAATCAAGGCCTCCAGGCGCTACCTTGCACCGGGTGGTGCTGAGCCACTGACTACCCGTCGCCACCCGTTCGTCGTTCTTGCAGTCGTCAGC < 1:833686/150‑1 AATATTCTGGTGGTGTAGGGCTGTGCGGCTGACGACTGCAAGAACGACGAACGGGTGGCGACGGGTAGTCAGTGGCTCAGCACCACCCGGTGCAAGGTAGCGCCTGGAGGCCTTGATTCTCAATCCTGACGAGAAGGCCCCGCACCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3673869‑3674020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccgAACAGGCGATACCGCCTGATTCAACGGCCGGGTGCGGGGCCTTCTCGTCAGGATTGAGAATCAAGGCCTCCAGGCGCTACCTTGCACCGGGTGGTGCTGAGCCACTGACTACCCGTCGCCACCCGTTCGTCGTTCTTGCAGTCGTCAGC < NC_002947/3674044‑3673896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |