New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3718247	61 (1.160)	6 (0.120)	6/232	NT	9.3%	coding (389/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
	?	NC_002947	= 3718253	60 (1.210)					coding (383/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase

CAGCCCCCATTGCTCGGCCTGTTCGGCGCCAAGGCGCTCGCCCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3718093‑3718247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccgCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAACAGGCC  <  NC_002947/3718253‑3718108                                                                                                                                                                                                                                                                                                               CAGCCCCCATTGCTCGGCCTGTTCGGCGCCAAGGCGCTCGCCCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACT                                                                                                                                                         <  2:169336/150‑1   GCCCCCATTGCTCGGCCTGTTCGGCGCCAAGGCGCTCGCCCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACTGG                                                                                                                                                       <  2:833506/150‑1                                          CCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAGCTGGCCGCCCGCTCGGCCAG                                                                                                                                       <  1:219211/127‑1                                          CCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAGCTGGCCGCCCGCTCGGCCAG                                                                                                                                       >  2:219211/1‑127                                                                                                     CCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACTGGCCGCCCGCTCGGCCAGT                                                                                                                                      >  1:1296534/1‑69                                                                                                     CCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACTGGCCGCCCGCTCGGCCAGT                                                                                                                                      <  2:1296534/69‑1                                                                                                                                      AAGGCCTGGATGAAACTGGCCGAGCGGGCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGG                                                                                >  1:126156/1‑90                                                                                                                                      AAGGCCTGGATGAAACTGGCCGAGCGGGCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGG                                                                                <  2:126156/90‑1                                                                                                                                                  gatCTGGCCGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAA        <  2:958386/147‑1                                                                                                                                                      TGGCCGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCGTGGCGCCGAACAGG    >  1:1273626/1‑150                                                                                                                                                        gtCGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAACAGGCC  >  1:1342429/3‑150                                                                                                                                                         CCGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGG               <  2:29906/136‑1                                                                                                                                                         CCGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGG               >  1:29906/1‑136                                                                                                                                                          CGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTG                                      <  1:616671/112‑1                                                                                                                                                          CGCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTG                                      >  2:616671/1‑112                                                                                                                                                           GCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAA        <  1:999432/141‑1                                                                                                                                                           GCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAA        >  2:999432/1‑141                                                                                                                                                                                                                                                                                                               CAGCCCCCATTGCTCGGCCTGTTCGGCGCCAAGGCGCTCGCCCAGCATGGCCAGCGCCTTGGCCCGGGCCATGCCGACCAAGCGCGGCAGCAGCCAAGTACCGCCGGAGTCCGGCACCAGGCCGATCTTGCAGAAGGCCTGGATGAAACTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3718093‑3718247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccgCCCGCTCGGCCAGTTTCATCCAGGCCTTCTGCAAGATCGGCCTGGTGCCGGACTCCGGCGGTACTTGGCTGCTGCCGCGCTTGGTCGGCATGGCCCGGGCCAAGGCGCTGGCCATGCTGGGCGAGCGCCTTGGCGCCGAACAGGCC  <  NC_002947/3718253‑3718108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.