New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3877527 = | 53 (1.010) | 3 (0.060) | 3/234 | NT | 5.7% | coding (572/1242 nt) | PP_3425 | RND family transporter MFP subunit |
? | NC_002947 | 3877546 = | 48 (0.960) | coding (591/1242 nt) | PP_3425 | RND family transporter MFP subunit |
GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3877678‑3877527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgtCACCCCGCTGACCAGCGT > NC_002947/3877546‑3877563 GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGAT < 1:1196902/150‑1 GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGAT > 1:695072/1‑150 CCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT > 1:622868/1‑150 TCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCTGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGCGT < 1:581692/150‑1 GCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGC > 1:262162/1‑139 GCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGC < 2:262162/139‑1 GTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACG < 1:886158/85‑1 GTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACG > 2:886158/1‑85 GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3877678‑3877527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgtCACCCCGCTGACCAGCGT > NC_002947/3877546‑3877563 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |