New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3975717	49 (0.930)	5 (0.100)	5/234	NT	8.9%	coding (104/591 nt)	PP_3505	hypothetical protein
	?	NC_002947	= 3975730	56 (1.120)					coding (91/591 nt)	PP_3505	hypothetical protein

GTGTGCGCCCGCTGGCAGTCAGCAGGGCCAGGCGGGCGCGTTGTCGATAGGCTTGGTCGAACAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3975565‑3975717 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCGGCTTCAACCCGGCGCCATCAGGCGCTGGCGCAGACCAAAGGGCTGCTGGCGGCGTTGTTCGACCAAGCCTATCGACAACGCGCCCGCCTGGCCCTGCTGA  <  NC_002947/3975730‑3975583                                                                                                                                                                                                                                                                                                               GTGTGCGCCCGCTGGCAGTCAGCAGGGCCAGGCGGGCGCGTTGTCGATAGGCATGGTCGAAAAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAG                                                                                                                                                         >  1:577596/1‑150                      GCAGGGCCAGGCGGGCGCGTTGTCGATAGGCTTGGTCGAACAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGCGCCAAGGCAGGCCTGCT                                                                                                                                    <  1:1116259/150‑1                                                    CTTGGTCGAACAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCA                                                                                                                                                       <  1:200055/101‑1                                                    CTTGGTCGAACAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCA                                                                                                                                                       >  2:200055/1‑101                                                                                       TGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGCGCCAAGGCAGGCCTGCTGAGTT                                                                                                                               <  1:671313/90‑1                                                                                       TGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGCGCCAAGGCAGGCCTGCTGAGTT                                                                                                                               >  2:671313/1‑90                                                                                         CGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGCGCCAAGGCAGGCCTGCTGAGT                                                                                                                                >  1:1068405/1‑87                                                                                         CGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAGCGCCAAGGCAGGCCTGCTGAGT                                                                                                                                <  2:1068405/87‑1                                                                                                                                                      GCAGCGCCAAGGCAGGCCTGCTGCGTTGTGGCCGGTGATCGTCGCTGCCTCGGCTTCAACCCGGCGCCATCAGGCACTGGAGCAGACCAAAGGGCTGTTTCCAGCTCTATGCGACGAAGCCTATCGACAACGCGCCCGCCTGGCCCTGCT    <  1:1315737/150‑1                                                                                                                                                        AGCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCGGCTTCAACCCGGCGCCATCAGGCGCTGGCGCAGACCAAAGGGCTGCTGGCGGCGTTGTTCGACCAAGCCTATCGACAACGCGCCCGCCTGGCCCTGCTGA  <  1:1405086/150‑1                                                                                                                                                                                                                                                                                                               GTGTGCGCCCGCTGGCAGTCAGCAGGGCCAGGCGGGCGCGTTGTCGATAGGCTTGGTCGAACAACGCCGCCAGCAGCCCTTTGGTCTGCGCCAGCGCCTGATGGCGCCGGGTTGAAGCCGAGGCATCGACGATCACCAGCCACAACTCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3975565‑3975717 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagCGCCAAGGCAGGCCTGCTGAGTTGTGGCTGGTGATCGTCGATGCCTCGGCTTCAACCCGGCGCCATCAGGCGCTGGCGCAGACCAAAGGGCTGCTGGCGGCGTTGTTCGACCAAGCCTATCGACAACGCGCCCGCCTGGCCCTGCTGA  <  NC_002947/3975730‑3975583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.