| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4014293 = | 41 (0.780) | 3 (0.060) | 3/236 | NT | 6.7% | intergenic (‑134/‑35) | PP_3541/PP_3542 | MgtC family transporter/hypothetical protein |
| ? | NC_002947 | 4014323 = | 44 (0.870) | intergenic (‑164/‑5) | PP_3541/PP_3542 | MgtC family transporter/hypothetical protein | |||||
ACCGACATGCGCAACTGCTCGTCGGTGATGATCTCGATGTCTGGGCCTTCGCCCTCGATGCGCAGGTCTTCGCCGATCAGCGTGCAGCGGCGGGTGGTTTCGTCGACTTCAATGGGCATGGTGGGGTCCTCCCGGGGTGATTA‑‑CAGGGTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014446‑4014293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaccCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCGGCCAACGCGTG > NC_002947/4014323‑4014471 ACCGACATGCGCAACTGCTCGTCGGTGATGATCTCGATGTCTGGGCCTTCGCCCTCGATGCGCAGGTCTTCGCCGATCAGCGTGCAGCGGCGGGTGGTTTCGTCGACTTCAATGGGCATGGTGGGGTCCTCCCGGGGTGATTA‑‑CAGGGTG < 2:342600/150‑1 TCGGTGATGATCTCGATGTCTGGGCCTTCGCCCTCGATGCGCAGGTCTTCGCCGATCAGCGTGCAGCGGCGGGTGGTTTCGTCGACTTCAATGGGCATGGTGGGGTCCACCC‑‑TGTAATCACCCCGGGAGGACCCCACCATGCCCATTGAA < 1:1222756/150‑1 TGGGGTCCTCCCGGGGTGATTA‑‑CAGGGTGGACCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCG < 1:1054140/123‑1 TGGGGTCCTCCCGGGGTGATTA‑‑CAGGGTGGACCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCG > 2:1054140/1‑123 GACCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCGGCCAACGC > 1:3428/1‑150 CCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGCTCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCG < 1:1039725/140‑1 CCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCGGCCAACGCGT > 2:879630/1‑150 CCCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCG > 2:1039725/1‑140 CCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCGGCCAACGCGTG > 1:40417/1‑150 CCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTG < 1:697222/135‑1 CCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTG > 2:697222/1‑135 ACCGACATGCGCAACTGCTCGTCGGTGATGATCTCGATGTCTGGGCCTTCGCCCTCGATGCGCAGGTCTTCGCCGATCAGCGTGCAGCGGCGGGTGGTTTCGTCGACTTCAATGGGCATGGTGGGGTCCTCCCGGGGTGATTA‑‑CAGGGTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014446‑4014293‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaccCCACCATGCCCATTGAAGTCGACGAAACCACCCGCCGCTGCACGCTGATCGGCGAAGACCTGCGCATCGAGGGCGAAGGCCCAGACATCGAGATCATCACCGACGAGCAGTTGCGCATGTCGGTGGCCGTACTGGCCGGCCAACGCGTG > NC_002947/4014323‑4014471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |