New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4034631 =	53 (1.010)	4 (0.080)	4/238	NT	6.9%	coding (117/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034664 =	57 (1.120)					coding (84/1320 nt)	PP_3556	membrane protein

TCGCGCTTTTTTCTGTCGTAATGAGGTAAGCCAACCATGAATGCAGTGATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4034783‑4034631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAGCGCGAACTCTGAA  >  NC_002947/4034664‑4034791                                                                                                                                                                                                                                                                                           TCGCGCTTTTTTCTGTCGTAATGAGGTAAGCCAACCATGAATGCAGTGATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTG                                                                                                                                     <  1:544792/150‑1   tcgcggTTTTCTGTCGTAATGAGGTAAGCCAACCATGAATGCAGTGATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGG                                                                                                                                   >  2:1091376/7‑150                                                GATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTG                                                                                                                                     <  1:200405/103‑1                                                GATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTG                                                                                                                                     >  2:200405/1‑103                                                                                                   GGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGA                                                                                              <  1:167540/91‑1                                                                                                   GGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGA                                                                                              >  2:167540/1‑91                                                                                                        TCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCAT                              >  2:1141220/1‑150                                                                                                                                    TGGGCTGGTGGGCGGCCTGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAGCGCGAACTCTGAA  <  1:1141220/150‑1                                                                                                                                                                                                                                                                                           TCGCGCTTTTTTCTGTCGTAATGAGGTAAGCCAACCATGAATGCAGTGATCGCCGCGGTCGGCATCATGCTGATACTCAGCCTGTCCCGCGTGCACGTGGTCATCGCCCTGATCATCGGCGCCCTGGCCGGTGGGCTGGTGGGCGGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4034783‑4034631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAGCGCGAACTCTGAA  >  NC_002947/4034664‑4034791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.