New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4034631 =	53 (1.010)	4 (0.080)	4/238	NT	6.9%	coding (117/1320 nt)	PP_3556	membrane protein
	?	NC_002947	4034664 =	57 (1.120)					coding (84/1320 nt)	PP_3556	membrane protein

CCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAGC  >  NC_002947/4034492‑4034779                                                                                                                                            |                                                                                                                                                     ccAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCCGACTTGGCGATTGCCCCGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGgccgc                                                                                                                                            >  2:238838/1‑150 (MQ=255)            ttcagagttcgcgcttttttctgtcgtaatgaggtaagccaaccatgaatgcagtgatcgccgcggtcggcatcatgctgatactcagcctgtcccgcgtgcacgtggtcatcgccctgatcatcggcGCCCAGGCCGCCCACCAGCCCa                                                                                                                                 <  1:1141220‑M1/22‑1 (MQ=255)                  aGTGCATGGGCCAGGCCAGACTTGGCGATTGACACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGcc                                                                                                                           >  1:629698/1‑150 (MQ=255)                     gCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAgg                                                                                                                        <  1:1378409/150‑1 (MQ=255)                           gccaggccagACTTGGCGATTGCGACGGCAAAGCCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCGCACCCACCGAGGCCACCGTTGAAGGCGTTGAGCGTGCCTTCGATGCCCAGGCCGCCGCCCACCCCAGCGACACGAGCGCCg                                                                                                                  >  2:309806/1‑150 (MQ=255)                             caggccagACTTGGCGACATGCGCGGCAAAGGCACCCAGCAGTGCATAGGACACAGCCACCGTGGCACCACCCCCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCgat                                                                                                                <  1:434111/150‑1 (MQ=255)                                 ccagACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATc                                                                                                            >  2:389688/1‑150 (MQ=255)                                  cagACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCa                                                                                                           <  2:176021/150‑1 (MQ=255)                                  cagACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCa                                                                                                           >  2:246369/1‑150 (MQ=255)                                     aCTTGGCGATTGCCACCGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAggg                                                                                                        <  2:435528/150‑1 (MQ=255)                                       ttGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCg                                                                                                      >  2:558706/1‑150 (MQ=255)                                        atgaggtaagccaaccatgaatgcagtgatcgccgcggtcggcatcatgctgatactcagcctgtcccgcgtgcacgtggtcatcgccctgatcatcggcGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGa                                                                                                     >  2:1141220‑M1/101‑150 (MQ=255)                                                 ccACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGt                                                                                            >  2:294472/1‑150 (MQ=255)                                                     ggCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGTCGCCCACCAg                                                                                                                                     <  2:518225/105‑1 (MQ=255)                                                     ggCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAg                                                                                                                                     >  1:518225/1‑105 (MQ=255)                                                             cACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACa                                                                                <  1:389688/150‑1 (MQ=255)                                                               cccAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAgg                                                                              >  1:943343/1‑150 (MQ=255)                                                                ccAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCAcgc                                                                                      <  1:942550/141‑1 (MQ=255)                                                                ccAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCAcgc                                                                                      >  2:942550/1‑141 (MQ=255)                                                                ccAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGc                                                                             >  1:432293/1‑150 (MQ=255)                                                                 cagcagTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCt                                                                            <  1:558706/150‑1 (MQ=255)                                                                   gcagTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGa                                                                          <  2:144780/150‑1 (MQ=255)                                                                      gTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTa                                                                       <  2:943343/150‑1 (MQ=255)                                                                                       aCCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGAcc                                                      >  1:80773/1‑150 (MQ=255)                                                                                          gTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACcgcg                                                   >  1:1179364/1‑150 (MQ=255)                                                                                            ggCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCgcggc                                                 <  1:294472/150‑1 (MQ=255)                                                                                             gCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCgcggcg                                                >  1:29589/1‑150 (MQ=255)                                                                                               accaccaccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGgccgcc                                                                                                                                           <  1:228764/57‑1 (MQ=255)                                                                                               accaccaccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGgccgcc                                                                                                                                           >  2:228764/1‑57 (MQ=255)                                                                                                 caccaccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCa                                            >  1:1226611/1‑150 (MQ=255)                                                                                                    caccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCgcgg                                                  <  1:917028/141‑1 (MQ=255)                                                                                                    caccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCgcgg                                                  >  2:917028/1‑141 (MQ=255)                                                                                                    caccGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTg                                         >  1:776643/1‑150 (MQ=255)                                                                                                        tcccgcgtgcacgtggtcatcgccctgatcatcggcGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGAcc                                                                                                <  1:167540‑M1/55‑1 (MQ=255)                                                                                                        tcccgcgtgcacgtggtcatcgccctgatcatcggcGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGAcc                                                                                                >  2:167540‑M1/37‑91 (MQ=255)                                                                                                         aGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTc                                    >  2:174921/1‑150 (MQ=255)                                                                                                           gCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCAt                                  <  2:432293/150‑1 (MQ=255)                                                                                                             cACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGt                                                                        >  1:1313383/1‑110 (MQ=255)                                                                                                             cACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGt                                                                        <  2:1313383/110‑1 (MQ=255)                                                                                                             cACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATgg                                <  2:1010410/150‑1 (MQ=255)                                                                                                             cACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATgg                                <  2:1226611/150‑1 (MQ=255)                                                                                                              aCCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCAcgc                                                                                      >  1:470727/1‑95 (MQ=255)                                                                                                              aCCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCAcgc                                                                                      <  2:470727/95‑1 (MQ=255)                                                                                                                cGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTg                             <  2:629698/150‑1 (MQ=255)                                                                                                                      aGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTAc                       <  1:174921/150‑1 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGa                                                                                  >  2:561824/1‑87 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGa                                                                                  <  1:561824/87‑1 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGc                                                                             <  2:1259053/92‑1 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGc                                                                             >  1:1259053/1‑92 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCATTGCATTCATGGTTGGCt                          <  1:814557/143‑1 (MQ=255)                                                                                                                          cTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCATTGCATTCATGGTTGGCt                          >  2:814557/1‑143 (MQ=255)                                                                                                                                cGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGa             <  2:773341/150‑1 (MQ=255)                                                                                                                                cGTGCCTGCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGa             <  1:355279/150‑1 (MQ=255)                                                                                                                                  tGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCgg                                                                                    <  1:1372939/77‑1 (MQ=255)                                                                                                                                  tGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCgg                                                                                    >  2:1372939/1‑77 (MQ=255)                                                                                                                                      ttCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTAc                       >  2:1177825/1‑134 (MQ=255)                                                                                                                                      ttCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTAc                       <  1:1177825/134‑1 (MQ=255)                                                                                                                                         gATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATc                                                                     >  1:421941/1‑85 (MQ=255)                                                                                                                                         gATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATc                                                                     <  2:421941/85‑1 (MQ=255)                                                                                                                                           tGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAgc  <  1:246369/150‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     CCAGGGCGCGGTCGGCCAGTGCATGGGCCAGGCCAGACTTGGCGATTGCCACGGCAAAGGCACCCAGCAGTGCATAGGACAAAGCCACCGTGGCACCACCACCGAGGCCACCGTTGAAGGCCTTGAGCGTGCCTTCGATGCCCAGGCCGCCCACCAGCCCACCGGCCAGGGCGCCGATGATCAGGGCGATGACCACGTGCACGCGGGACAGGCTGAGTATCAGCATGATGCCGACCGCGGCGATCACTGCATTCATGGTTGGCTTACCTCATTACGACAGAAAAAAGC  >  NC_002947/4034492‑4034779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.