| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4073156 = | 45 (0.860) | 4 (0.080) | 4/234 | NT | 8.8% | coding (351/1308 nt) | mdtA | multidrug transporter membrane fusion protein |
| ? | NC_002947 | 4073176 = | 40 (0.800) | coding (331/1308 nt) | mdtA | multidrug transporter membrane fusion protein | |||||
CCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4073273‑4073156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG > NC_002947/4073176‑4073324 CCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTC < 1:172481/146‑1CCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTC > 2:172481/1‑146 CTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGG > 1:1082317/1‑116 CTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGG < 2:1082317/116‑1 TCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGGC > 1:732814/1‑116 TCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGGC < 2:732814/116‑1 CTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAA < 1:355632/113‑1 CTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAA > 2:355632/1‑113 CACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑G > 1:381135/1‑92 CACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑G < 2:381135/92‑1 CAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTG < 2:878611/80‑1 CCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG < 2:1266039/150‑1 CCTTCCTTGAAGGGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG < 1:278422/150‑1 CCTCTACTACAAAGCCTTGGGCACGGTTACCGCGACCAATACGGTCAATGTGCGCAGCCGCGTGGCTGGCGAACTGGTGAAAATCCACTTCAAGGAAGGCCAGCGCGTCAAG‑GCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4073273‑4073156‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGACGCGTACGGGTACCGGGTCGCTG > NC_002947/4073176‑4073324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |