New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4073156 =	45 (0.860)	4 (0.080)	4/234	NT	8.8%	coding (351/1308 nt)	mdtA	multidrug transporter membrane fusion protein
	?	NC_002947	4073176 =	40 (0.800)					coding (331/1308 nt)	mdtA	multidrug transporter membrane fusion protein

TTGGCGATGCTGTCTTCAGCGTACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGAC  >  NC_002947/4073007‑4073302                                                                                                                                                      |                                                                                                                                                    cagcgacccggtacccgtacgcgtcgtgccggtgcggataggcgacttccccctctactacaaagccttgggcacggttaccgcgaccaatacggtcaatgtgcgcagccgcgtggctggcgaactggtgaaaatccccttcaaggaagg                                                                                                                                                     <  1:278422‑M1/1‑1 (MQ=255) cagcgacccggtacccgtacgcgtcgtgccggtgcggataggcgacttccccctctactacaaagccttgggcacggttaccgcgaccaatacggtcaatgtgcgcagccgcgtggctggcgaactggtgaaaatccacttcaaggaagg                                                                                                                                                     <  2:1266039‑M1/1‑1 (MQ=255)        tGCTGTCTTCAGCGTACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑Ct                                                                                                                                             <  1:7307/150‑1 (MQ=255)             tCTTCAGCGTACAGGCCTTTATAGCGGGCCAGTTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGAcg                                                                                                                                        >  1:608712/1‑150 (MQ=255)               ttCAGCGTACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCTAAGGTGCCAACACGGAAGAGCAGGGGTATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCCGGTCGCCAGC‑CTTGAcgcg                                                                                                                                      >  1:461571/1‑150 (MQ=255)                   gCGTACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTgg                                                                                                                                  >  1:553326/1‑150 (MQ=255)                      tACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGcct                                                                                                                               >  1:285547/1‑150 (MQ=255)                         aGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGccttcc                                                                                                                            >  1:1016686/1‑150 (MQ=255)                              tttATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCCAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGaa                                                                                                                       >  1:1243522/1‑150 (MQ=255)                              tttATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGaa                                                                                                                       >  2:121208/1‑150 (MQ=255)                              tttATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGaa                                                                                                                       <  1:149792/150‑1 (MQ=255)                              tctataGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGaa                                                                                                                       >  1:141104/3‑150 (MQ=255)                                 ataGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGATGCGCTGGCCTTCCTTGAAGTg                                                                                                                    <  1:1268267/150‑1 (MQ=255)                                                   cTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCgcc                                                                                                  >  1:108441/1‑150 (MQ=255)                                                           tcttcAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCAcgc                                                                                          <  2:608712/150‑1 (MQ=255)                                                           tcttaAACTGTGCCTGGTTCTGCGCCAAGGCGCCTTCGGCCTGCGGCAGGTCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCAcgc                                                                                          <  2:1016686/150‑1 (MQ=255)                                                               cAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTCCGCCAGCCACGCGGCt                                                                                      <  2:461571/150‑1 (MQ=255)                                                                        cTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACAtt                                                                             >  2:278422/1‑150 (MQ=255)                                                                         tGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGGTTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTg                                                                            >  1:12778/1‑150 (MQ=255)                                                                            ttCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGAcc                                                                         <  2:841669/150‑1 (MQ=255)                                                                            ttCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGGCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGAcc                                                                         >  2:1155124/1‑150 (MQ=255)                                                                             tCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGAGCGGGTCGATTTCGGCCAGCAGGTCGACAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCg                                                                        <  1:1387081/150‑1 (MQ=255)                                                                               tGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTa                                                                      >  1:269748/1‑150 (MQ=255)                                                                                  gcCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAg                                                                                                                      <  1:926805/99‑1 (MQ=255)                                                                                  gcCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAg                                                                                                                      >  2:926805/1‑99 (MQ=255)                                                                                    cAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGc                                                                                                                                                >  1:1282556/1‑72 (MQ=255)                                                                                    cAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGc                                                                                                                                                <  2:1282556/72‑1 (MQ=255)                                                                                         tGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCgg                                                            <  2:1243522/150‑1 (MQ=255)                                                                                           ccTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTg                                                                                                                         >  1:60750/1‑87 (MQ=255)                                                                                           ccTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTg                                                                                                                         <  2:60750/87‑1 (MQ=255)                                                                                           ccTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTa                                                          >  2:1219476/1‑150 (MQ=255)                                                                                             ttCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAAc                                                        >  1:82502/1‑150 (MQ=255)                                                                                              tCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAAcc                                                       <  1:121208/150‑1 (MQ=255)                                                                                                ggCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGt                                                     <  2:315875/150‑1 (MQ=255)                                                                                                ggCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGt                                                     >  1:315875/1‑150 (MQ=255)                                                                                                 gCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTg                                                                            <  1:651584/126‑1 (MQ=255)                                                                                                 gCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTg                                                                            >  2:651584/1‑126 (MQ=255)                                                                                                  ccTGCTGCAGGGCGATGCGATAAGGGCGCGGCTAGATTTCGGAGAGCAGCTCGCCCGC‑GTTGACGCTCTGGCCGTCCGGGAACGGGATGTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGc                                                   >  2:1230933/1‑150 (MQ=255)                                                                                                            ggCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCttt                                         <  2:553326/150‑1 (MQ=255)                                                                                                                atgcgatAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTgtag                                     >  1:990622/1‑150 (MQ=255)                                                                                                                 tgcgatAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTgtagt                                    <  1:1219476/150‑1 (MQ=255)                                                                                                                     atAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTagag                                >  1:1266039/1‑150 (MQ=255)                                                                                                                       aaGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAggg                              <  1:1301316/150‑1 (MQ=255)                                                                                                                          gaactggtgaaaatccacttcaaggaagGCCAGCGCGTCAAG‑GCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAgg                               <  1:172481‑M1/118‑1 (MQ=255)                                                                                                                          gaactggtgaaaatccacttcaaggaagGCCAGCGCGTCAAG‑GCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAgg                               >  2:172481‑M1/29‑146 (MQ=255)                                                                                                                                   cGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACTGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTa                  <  1:1155124/150‑1 (MQ=255)                                                                                                                                      tttCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATcc               >  2:630093/1‑150 (MQ=255)                                                                                                                                          ggCCAGCAGGTCGCCAGC‑CTTGACGCGNTGGCCTTCCTTGNAGTGGANTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCACGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCAc           >  1:1139595/1‑150 (MQ=255)                                                                                                                                            ttcaaggaagGCCAGCGCGTCAAG‑GCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAg                                              >  2:355632‑M1/11‑113 (MQ=255)                                                                                                                                            ttcaaggaagGCCAGCGCGTCAAG‑GCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAg                                              <  1:355632‑M1/103‑1 (MQ=255)                                                                                                                                              agcagGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGc       >  1:765371/1‑150 (MQ=255)                                                                                                                                                   gTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCATTTTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCacgac  >  1:100037/1‑150 (MQ=255)                                                                                                                                                   gTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGGAGTCGCCTATCCGCACCGGCacgac  >  2:157242/1‑150 (MQ=255)                                                                                                                                                      GCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTaga                                 >  1:732814‑M1/1‑116 (MQ=255)                                                                                                                                                      GCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTaga                                 <  2:732814‑M1/116‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TTGGCGATGCTGTCTTCAGCGTACAGGCCTTTATAGCGGGCCAGGTCGACCTGAGCGTTCTTCAACTGTGCCTGGTTCTGCGCCAAGGTGCCTTCGGCCTGCTGCAGGGCGATGCGATAAGGGCGCGGGTCGATTTCGGCCAGCAGGTCGCCAGC‑CTTGACGCGCTGGCCTTCCTTGAAGTGGATTTTCACCAGTTCGCCAGCCACGCGGCTGCGCACATTGACCGTATTGGTCGCGGTAACCGTGCCCAAGGCTTTGTAGTAGAGGGGGAAGTCGCCTATCCGCACCGGCACGAC  >  NC_002947/4073007‑4073302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.