| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4084298 | 60 (1.140) | 5 (0.100) | 5/232 | NT | 8.0% | coding (396/720 nt) | PP_3594 | amino acid ABC transporter permease |
| ? | NC_002947 | = 4084322 | 58 (1.170) | coding (420/720 nt) | PP_3594 | amino acid ABC transporter permease | |||||
CTGCCAGATCGCCGCGCAGAAGATCCTCGCCGCCATGGGCTACCAAGGTGAGTTCCTCATCAACACCTTCCTCGCCGCGATGATCGCCTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4084145‑4084298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaagCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGCGAACACCAGGCTGAAGGCGATCATCGCGGCGAGGAAGGTGTTGATGAGGAACTCACCTTGGTAGCCCATGGCG < NC_002947/4084322‑4084175 CTGCCAGATCGCCGCGCAGAAGATCCTCGCCGCCATGGGCTACCAAGGTGAGTTCCTCATCAACACCTTCCTCGCCGCGATGATCGCCTTCAGCTTGGGGGTTTCCGCGTTGTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCC > 1:448520/1‑150 GCCAGATCGCCGCGCAGAAGATCCTCGCCGCCATGGGCTACCAAGGTGAGTTCCTCATCAACACCTTCCTCGCCGCGATGATCGCCTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCA > 1:1270452/1‑150 CAAGGTGAGTTCCTCATCAACACCTTCCTCGCCGCGATGATCGCCTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTT < 1:1353969/150‑1 CTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGG > 1:257715/1‑111 CTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGG < 2:257715/111‑1 AGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAGCGCCGAGCAGGCTTCCAGCTGGCCCTT > 1:279965/1‑66 AGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAGCGCCGAGCAGGCTTCCAGCTGGCCCTT < 2:279965/66‑1 CAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGCGAACACCAGGCTGAAGGCGATCATCGCGGCGAGGAAGGTGTTGATGAGGAACTCACCTTGGTAGCCCATGG < 2:395643/150‑1 CAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGC < 1:1320627/79‑1 CAAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGC > 2:1320627/1‑79 AAGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGCGAACACCAGGCTGAAGGCGATCATCGCGGCGAGGAAGGTGTTGATGAGGAACTCACCTTGGTAGCCCATGGC > 2:1285543/1‑150 AGCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGCGAACACCAGGCTGAAGGCGATCATCGCGGCGAGGAAGGTGTTGATGAGGAACTCACCTTGGTAGCCCATGGCG < 1:1285543/150‑1 CTGCCAGATCGCCGCGCAGAAGATCCTCGCCGCCATGGGCTACCAAGGTGAGTTCCTCATCAACACCTTCCTCGCCGCGATGATCGCCTTCAGCCTGGTGTTCGCCGCGTTTTCCAGCGAGATCTGGCTGGCAGCCTTCAAGACCCTGCCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4084145‑4084298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaagCGCCGAGCAGGCTTCCAGCTGGCCCTTGGGCAGGGTCTTGAAGGCTGCCAGCCAGATCTCGCTGGAAAACGCGGCGAACACCAGGCTGAAGGCGATCATCGCGGCGAGGAAGGTGTTGATGAGGAACTCACCTTGGTAGCCCATGGCG < NC_002947/4084322‑4084175 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |