New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4127342 = | 54 (1.030) | 4 (0.080) | 4/230 | NT | 8.8% | coding (63/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D |
? | NC_002947 | 4127381 = | 32 (0.650) | coding (24/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D |
ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4127496‑4127342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG > NC_002947/4127381‑4127528 ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGAGCACCCCTGCCACTGGCTGCTTGCCTGGCGCTGGCCGGCCTTGGCA < 2:415206/150‑1 CACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTAT < 1:720623/107‑1 CACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTAT > 2:720623/1‑107 TGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCCGGGGTGATCTGCACGTCCTCAGATGCTCCTTGAGCGTCTCATGTTTTTTTATATCGTCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTA > 2:161495/1‑150 TGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAAT > 1:460705/1‑150 GCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTG > 2:458930/1‑150 GCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGG > 1:514113/1‑150 AGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG < 2:1100246/150‑1 ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4127496‑4127342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG > NC_002947/4127381‑4127528 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |