| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4127342 = | 54 (1.030) | 4 (0.080) | 4/230 | NT | 8.8% | coding (63/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D |
| ? | NC_002947 | 4127381 = | 32 (0.650) | coding (24/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D | |||||
CGGAGTAGCCGTTGTCAGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGC > NC_002947/4127194‑4127486 | ccgccccagagcgctgcgttgccgatgacgcaattgtaatgcgccgatcaccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCt < 2:1100246‑M1/2‑1 (MQ=255) ccccagagcgctgcgttgccgatgacgcaattgtaatgcgccgatcaccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGc > 1:514113‑M1/146‑150 (MQ=255) cagagcgctgcgttgccgatgacgcaattgtaatgcgccgatcaccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGc > 2:458930‑M1/143‑150 (MQ=255) aGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGc > 1:741229/1‑150 (MQ=255) gCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGcc > 2:425803/1‑150 (MQ=255) ttGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAg > 1:1100246/1‑150 (MQ=255) ttGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAg > 2:105055/1‑150 (MQ=255) atGTTTGCTCGGGTTGTGTGGGGGGGCCACAGAATCGCGATTATCGCGATTGAATTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAg > 2:54050/2‑150 (MQ=255) ttGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCAGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGcc > 1:280095/1‑150 (MQ=255) gCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAg > 2:757673/1‑150 (MQ=255) gCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAg < 1:213535/150‑1 (MQ=255) tCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGc > 1:1355851/1‑150 (MQ=255) tCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGc > 1:39871/1‑150 (MQ=255) gggTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCaa < 2:39871/150‑1 (MQ=255) attgtaatgcgccgatcaccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagca > 1:460705‑M1/117‑150 (MQ=255) gtgtgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCTGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagcagc > 2:1027597/1‑150 (MQ=255) tgtgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCGGGCCAGCGCCAGGCAAGCAGcc > 1:1384231/1‑150 (MQ=255) taatgcgccgatcaccttggcgttatctgccggccgtcaatcttggcccgacgatataaaaaaacatgagacgctcaaggagcatctgaggacgtgcagatcaccccggacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa > 2:161495‑M1/113‑150 (MQ=255) gtgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGccc < 2:1355851/150‑2 (MQ=255) gtgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa < 2:228567/150‑1 (MQ=255) tgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAg > 1:610693/1‑150 (MQ=255) tgGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAgtg > 1:1010893/1‑150 (MQ=255) tgGGGGCCACAGAATCGCGATTATAGCGCTGGTAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAgtg > 1:970015/1‑150 (MQ=255) gCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAgg < 1:425803/150‑1 (MQ=255) ccACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAggg < 2:970015/150‑1 (MQ=255) acaGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCt > 1:795651/1‑107 (MQ=255) acaGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCt < 2:795651/107‑1 (MQ=255) aatcgcgataatcgcgatTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCAACGCCCGCTGCAGCAACAACCTGGCTTCCAACGCGGCCTAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATc > 1:1315053/1‑150 (MQ=255) gattatcgcgattGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACg > 2:851450/1‑150 (MQ=255) cgattGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGa < 1:757673/150‑1 (MQ=255) gAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGCGCTGCCTTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTc < 2:336447/150‑1 (MQ=255) gTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCtt > 2:1301286/1‑150 (MQ=255) tAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTg > 1:1175990/1‑150 (MQ=255) gTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa > 1:116242/1‑101 (MQ=255) gTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa < 2:116242/101‑1 (MQ=255) ttAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagcagc > 2:1197104/1‑98 (MQ=255) ttAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagcagc < 1:1197104/98‑1 (MQ=255) aaGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgt > 1:153651/1‑150 (MQ=255) aGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGTCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgtt < 1:542467/150‑1 (MQ=255) aGCACGATGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGa < 1:925562/110‑1 (MQ=255) aGCACGATGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGa > 2:925562/1‑110 (MQ=255) gCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgttg > 2:257094/1‑150 (MQ=255) ataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTg < 1:720623‑M1/50‑1 (MQ=255) ataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTg > 2:720623‑M1/58‑107 (MQ=255) gggTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTTAACGTCGCATTTGTTGTTATGTcgg < 1:279688/150‑1 (MQ=255) tgctgcCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTcggcgg < 2:1282164/150‑1 (MQ=255) gctgcCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCCCGTCATCCGATGCTCGTTGAACGTCGCATTTTTTGTGATGTCGGCggg < 2:1086032/150‑1 (MQ=255) ccTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAg > 2:554767/1‑150 (MQ=255) cTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCAGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGa > 1:532584/1‑150 (MQ=255) tGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAc < 2:741229/150‑1 (MQ=255) ccGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAg < 2:1041188/68‑1 (MQ=255) ccGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAg > 1:1041188/1‑68 (MQ=255) cTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAAc < 1:1421585/150‑1 (MQ=255) ttttttCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagcag > 2:724705/1‑54 (MQ=255) ttttttCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAagcag < 1:724705/54‑1 (MQ=255) ttCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCaa < 2:153651/150‑1 (MQ=255) tCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAg < 1:257094/150‑1 (MQ=255) cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCGAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAAc > 1:739500/1‑140 (MQ=255) cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGGGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGa > 1:1420646/1‑150 (MQ=255) cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAAc < 2:739500/140‑1 (MQ=255) gcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATc < 1:105055/150‑1 (MQ=255) acaacCTGGCTGCCAATGCCGTCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGCCGGCCGGCAGATAACGCCAAGGTGATCGgc < 2:360653/150‑1 (MQ=255) acCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTcggcgg < 2:686184/106‑1 (MQ=255) acCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTcggcgg > 1:686184/1‑106 (MQ=255) | CGGAGTAGCCGTTGTCAGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGC > NC_002947/4127194‑4127486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |