| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4239756 = | 64 (1.220) | 4 (0.080) | 4/238 | NT | 5.7% | coding (578/900 nt) | PP_3717 | LuxR family transcriptional regulator |
| ? | NC_002947 | 4239815 = | 70 (1.380) | coding (519/900 nt) | PP_3717 | LuxR family transcriptional regulator | |||||
CAAGGCCTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4239908‑4239756‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTCTTCACTGCAACCTGTACCCAGGTAATAGGCCTTGTAGTAGTCGCTGTCGAAGAAGTTGTCGGGGGCGATTTCCTGCAGGTGGTAGAA > NC_002947/4239815‑4239961 CAAGGCCTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGA < 1:1198031/150‑1 GGCCTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCC < 1:47759/150‑1 TACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCC > 1:73609/1‑113 TACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCC < 2:73609/113‑1 CCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCCCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTC < 1:389146/129‑1 CCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCCCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTC > 2:389146/1‑129 GCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCCCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTCTTCACTGCAACCTGTACCCAGGTAATAGGCCTTGTAGT > 1:1137931/1‑150 CCTGTTGCGTGCGCTGGAGCCCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTCTTCACTGCAACCTGTACCCAGGTAATAGGCCTTGTAGTAGTCGCTGTCGAAGAAGTTGTCGGGGGCGAT < 2:1137931/150‑1 GCCCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTCTTCACTGCAACCTGTACCCAGGTAATAGGCCTTGTAGTAGTCGCTGTCGAAGAAGTTGTCGGGGGCGATTTCCTGCAGGTGGTAGAA < 1:1221325/150‑1 CAAGGCCTATTACCTGGGTACAGGTTGCAGTGAAGACAGCTACTACATCGTCGACATCAGCGCAGGCCGCAAGCTGTCGCTGAGCCTGTTCCAGGGCTGCAGCGGCACGCGCCTGAACGCCGGGCAGGTCGACCTGTTGCGTGCGCTGGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4239908‑4239756‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccCTGGAACAGGCTCAGCGACAGCTTGCGGCCTGCGCTGATGTCGACGATGTAGTAGCTGTCTTCACTGCAACCTGTACCCAGGTAATAGGCCTTGTAGTAGTCGCTGTCGAAGAAGTTGTCGGGGGCGATTTCCTGCAGGTGGTAGAA > NC_002947/4239815‑4239961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |