| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4246911 = | 74 (1.410) | 4 (0.080) | 4/238 | NT | 5.3% | coding (1050/1608 nt) | aruI | 2‑ketoarginine decarboxylase AruI |
| ? | NC_002947 | 4246945 = | 72 (1.420) | coding (1016/1608 nt) | aruI | 2‑ketoarginine decarboxylase AruI | |||||
ATCGACCCGCGCAAGTTCAACGATTTCTACCCCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4247063‑4246911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGGTCGATGT > NC_002947/4246945‑4247065 ATCGACCCGCGCAAGTTCAACGATTTCTACCCCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCTCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAG > 1:478991/1‑150 GACCCGCGCAAGTTCAACGATTTCTACCCCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCC > 2:395769/1‑150 CAAGTTCAACGATTTCTACCCCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCCTGGCGCAG‑GGTGGCCACCGCCGCG‑CTGGCCTGGGCCGG < 2:319871/150‑1 CCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGC < 1:147129/121‑1 CCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGC > 2:147129/1‑121 CCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGG > 2:613303/1‑150 CAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGG > 1:1082151/1‑150 C‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAACCCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGGTCGAT < 1:319871/150‑1 GCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGGTCGATGT < 1:98911/124‑1 GCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGGTCGATGT > 2:98911/1‑124 GCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAAT < 1:505240/83‑1 GCCTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAAT > 2:505240/1‑83 CTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGG < 1:1019713/115‑1 CTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGG > 2:1019713/1‑115 ATCGACCCGCGCAAGTTCAACGATTTCTACCCCTGTGCCATTGCCCTGCAGGGTGATGCCCGGCAAACCTTGGACGGTTTGCTCGAACACCTGCCCGCACTTCAGCGTGACCCGGCCCAGGCC‑AGCGCGGCGGTGGCCACC‑CTGCGCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4247063‑4246911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGGGCCGGGTCACGCTGAAGTGCGGGCAGGTGTTCGAGCAAACCGTCCAAGGTTTGCCGGGCATCACCCTGCAGGGCAATGGCACAGGGGTAGAAATCGTTGAACTTGCGCGGGTCGATGT > NC_002947/4246945‑4247065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |