New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4861173 =	45 (0.860)	13 (0.310)	10/196	NT	25.1%	intergenic (‑79/+158)	ligA/PP_4275	DNA ligase/cell division protein ZipA
	?	NC_002947	4861264 =	42 (1.010)					intergenic (‑170/+67)	ligA/PP_4275	DNA ligase/cell division protein ZipA

AACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4861346‑4861173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggtttacccgcgaagaggcCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCAC  >  NC_002947/4861264‑4861411                                                                                                                                                                                                                                                                                                                                    AACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              <  2:288628/150‑1   CCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              >  1:1116849/1‑148   CCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCAGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              <  2:1116849/148‑1    CCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGTGAG                                                                                                                                                                           >  1:731931/1‑150    CCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAG                                                                                                                                                                           >  2:1098315/1‑150    CCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAG                                                                                                                                                                           >  1:535567/1‑150    CCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAG                                                                                                                                                                           >  1:44017/1‑150    CCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCAAGTGACGCCCTTGTGTGAG                                                                                                                                                                           >  1:19261/1‑150       GAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGG                                                                                                                                                                        <  1:1253277/150‑1       GAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGG                                                                                                                                                                        <  2:44017/150‑1        AAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                                                                                       <  1:437474/150‑1            GCTGACAGATCCAGACGAAATAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTA                                                                                                                                                                   >  2:59673/1‑150             CTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTAC                                                                                                                                                                  <  1:683976/150‑1              TGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACC                                                                                                                                                                 >  2:106863/1‑150               GACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                                                                                       >  1:279986/1‑143               GACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                                                                                       <  2:279986/143‑1                      CCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGCGTTTACCCGCGAAGA                                                                                                                                                         <  2:186548/150‑1                              AAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCCAAGAGGatggaa                                                                                                                                                 >  1:1124079/1‑144                                                      CCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              <  1:335812/97‑1                                                      CCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              >  2:335812/1‑97                                                                    GTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTC                                                                                                           >  2:913550/1‑150                                                                                 CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGC                                                                                                                       >  2:830658/1‑125                                                                                 CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGC                                                                                                                       <  1:830658/125‑1                                                                                                GTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              >  1:646047/1‑55                                                                                                GTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGG                                                                                                                                                                              <  2:646047/55‑1                                                                                                      CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTC                                                                         >  1:1003749/1‑150                                                                                                       ctCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCT                                                                        >  2:708807/3‑150                                                                                                       CGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCT                                                                        >  2:836394/1‑150                                                                                                        GCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTG                                                                       >  2:677482/1‑150                                                                                                         CTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGG                                                                      <  1:913550/150‑1                                                                                                                  GTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGG                                                                      <  2:1255933/141‑1                                                                                                                  GTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGG                                                                      >  1:1255933/1‑141                                                                                                                       TCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                      >  2:744551/1‑56                                                                                                                       TCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                      <  1:744551/56‑1                                                                                                                           CGCCCTAGGGCATGTGACGCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCG                                                    >  2:483665/1‑150                                                                                                                             CCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAc                                                  <  1:1129142/150‑2                                                                                                                                  GGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGA                                             <  2:829871/150‑1                                                                                                                                                    TGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGT                           <  1:708807/150‑1                                                                                                                                                     GGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTG                          >  2:689769/1‑150                                                                                                                                                         GCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCG                      >  1:569713/1‑150                                                                                                                                                          CGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGA                     <  2:1279458/150‑1                                                                                                                                                            GGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGTCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATG                   <  2:1336475/150‑1                                                                                                                                                            GGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATG                   <  2:1003749/150‑1                                                                                                                                                            GGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATG                   <  2:146656/150‑1                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGG            >  2:918965/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGG            >  1:988809/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGG            >  1:1157977/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTC                                                                                           <  2:1387615/71‑1                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTC                                                                                           >  1:1387615/1‑71                                                                                                                                                                     GCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTA                             >  2:1052534/1‑131                                                                                                                                                                     GCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTA                             <  1:1052534/131‑1                                                                                                                                                                      CGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGG         <  1:689769/150‑1                                                                                                                                                                             GCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCAC  >  1:1218066/1‑150                                                                                                                                                                                                                                                                                                                                    AACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTGAGGGCGTGCTGGCCGGTTCGGGTATCGTCGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4861346‑4861173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggtttacccgcgaagaggcCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGCAC  >  NC_002947/4861264‑4861411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.